View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13692_low_4 (Length: 595)

Name: NF13692_low_4
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13692_low_4
NF13692_low_4
[»] chr7 (14 HSPs)
chr7 (18-581)||(1316341-1316908)
chr7 (460-564)||(48374430-48374534)
chr7 (481-561)||(6442253-6442333)
chr7 (498-544)||(44350831-44350877)
chr7 (485-536)||(19422850-19422901)
chr7 (498-536)||(11824184-11824222)
chr7 (481-535)||(32205190-32205244)
chr7 (484-554)||(39254178-39254248)
chr7 (498-544)||(46517396-46517442)
chr7 (484-536)||(6580017-6580069)
chr7 (498-534)||(22190054-22190090)
chr7 (498-554)||(27888377-27888433)
chr7 (484-536)||(27949386-27949438)
chr7 (502-558)||(33008195-33008251)
[»] chr6 (8 HSPs)
chr6 (484-556)||(32598963-32599035)
chr6 (484-544)||(12753775-12753835)
chr6 (498-558)||(31116153-31116213)
chr6 (484-536)||(32112732-32112784)
chr6 (498-548)||(2675996-2676046)
chr6 (502-536)||(10133191-10133225)
chr6 (498-536)||(34905449-34905487)
chr6 (500-536)||(1392740-1392776)
[»] chr2 (17 HSPs)
chr2 (498-564)||(36471867-36471933)
chr2 (484-564)||(12989276-12989356)
chr2 (484-580)||(25730454-25730550)
chr2 (481-544)||(26767773-26767836)
chr2 (498-534)||(27494480-27494516)
chr2 (486-564)||(2122880-2122958)
chr2 (484-562)||(30718342-30718420)
chr2 (504-570)||(35316436-35316502)
chr2 (484-536)||(14489554-14489606)
chr2 (484-536)||(25238292-25238344)
chr2 (484-536)||(44274347-44274399)
chr2 (484-536)||(45554672-45554724)
chr2 (485-536)||(4552856-4552907)
chr2 (499-558)||(10981609-10981668)
chr2 (484-539)||(19953506-19953561)
chr2 (469-536)||(38464276-38464343)
chr2 (484-536)||(6980135-6980187)
[»] chr4 (20 HSPs)
chr4 (484-558)||(37451028-37451102)
chr4 (484-536)||(39471270-39471322)
chr4 (500-556)||(45081773-45081829)
chr4 (481-554)||(722252-722325)
chr4 (481-554)||(754592-754665)
chr4 (481-556)||(40991601-40991676)
chr4 (484-562)||(24938430-24938508)
chr4 (498-539)||(34129429-34129470)
chr4 (484-536)||(20454651-20454703)
chr4 (481-533)||(38537525-38537577)
chr4 (484-531)||(13070059-13070106)
chr4 (482-520)||(30033341-30033379)
chr4 (510-548)||(31250924-31250962)
chr4 (498-535)||(45310977-45311014)
chr4 (516-564)||(4138950-4138998)
chr4 (484-536)||(8109069-8109121)
chr4 (484-536)||(25719127-25719179)
chr4 (514-558)||(41153243-41153287)
chr4 (481-521)||(41278744-41278784)
chr4 (484-544)||(50164500-50164560)
[»] chr3 (22 HSPs)
chr3 (502-580)||(138832-138910)
chr3 (498-558)||(55452044-55452104)
chr3 (484-549)||(2009094-2009159)
chr3 (484-533)||(48351552-48351601)
chr3 (502-562)||(742043-742103)
chr3 (502-554)||(10948593-10948645)
chr3 (498-558)||(18427179-18427239)
chr3 (484-536)||(24734818-24734870)
chr3 (484-536)||(41451910-41451962)
chr3 (498-558)||(46450157-46450217)
chr3 (498-536)||(24429054-24429092)
chr3 (498-536)||(28529364-28529402)
chr3 (498-568)||(29388623-29388693)
chr3 (468-529)||(49418418-49418479)
chr3 (502-558)||(752483-752539)
chr3 (486-558)||(2419481-2419553)
chr3 (502-542)||(8825012-8825052)
chr3 (484-536)||(20493460-20493512)
chr3 (484-536)||(29588748-29588800)
chr3 (484-581)||(30355143-30355242)
chr3 (498-558)||(46161038-46161098)
chr3 (484-536)||(52123971-52124023)
[»] chr1 (17 HSPs)
chr1 (491-536)||(16948551-16948596)
chr1 (498-558)||(12767357-12767417)
chr1 (484-548)||(15906511-15906575)
chr1 (486-536)||(51732390-51732440)
chr1 (491-548)||(931475-931532)
chr1 (484-536)||(8741238-8741290)
chr1 (484-536)||(26980277-26980329)
chr1 (474-554)||(33059898-33059978)
chr1 (484-536)||(41948161-41948213)
chr1 (484-535)||(39974215-39974266)
chr1 (498-544)||(15928660-15928706)
chr1 (484-538)||(25543450-25543504)
chr1 (502-536)||(37552982-37553016)
chr1 (465-534)||(19101597-19101666)
chr1 (491-536)||(33193163-33193208)
chr1 (484-536)||(8899127-8899179)
chr1 (484-536)||(36160281-36160333)
[»] chr8 (9 HSPs)
chr8 (484-536)||(6098792-6098844)
chr8 (484-544)||(16983499-16983559)
chr8 (498-536)||(1977202-1977240)
chr8 (485-535)||(5095776-5095826)
chr8 (500-558)||(7493373-7493431)
chr8 (481-549)||(5727331-5727400)
chr8 (484-536)||(36804854-36804906)
chr8 (494-536)||(3099631-3099673)
chr8 (498-536)||(17499262-17499300)
[»] scaffold0018 (1 HSPs)
scaffold0018 (484-558)||(27903-27977)
[»] chr5 (6 HSPs)
chr5 (484-558)||(17434865-17434938)
chr5 (484-529)||(2935449-2935494)
chr5 (484-533)||(28223791-28223840)
chr5 (499-558)||(43405484-43405543)
chr5 (484-536)||(28490737-28490789)
chr5 (510-554)||(28611819-28611863)
[»] scaffold0016 (1 HSPs)
scaffold0016 (486-554)||(204725-204793)


Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Complemental strand, 1316908 - 1316341
Alignment:
Q  18 aaaaaagcaattttcttcgttctcttgttaatcaactcttcttatatatgggcttcttgataaagtataggagtaattttttagctatttcttttacacc 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1316908 aaaaaagcaattttcttcattctcttgttaatcaactcttcttatatatgggcttcttgataaagtataggagtaattttttagctatttcttttacacc 1316809  T
Q  118 tccgttttt-cttgtgtgctctattcaaattataaaattcaaaaaataaatgaaga---gtttttgaaggtatttaaacgtgttttagaagatttagaaa 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  1316808 tccgtttttgcttgtgtgctctattcaaattataaaattcaaaaaataaatgaagaagagtttttgaaggtatttaaacgtgttttagaagatttagaaa 1316709  T
Q  214 cattaatatttttcgaattataaagttcaaagttctcagggaaaataaaaaactatttggatggaaaaagaagacaaacaannnnnnnnngtctatgaca 313  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||         ||||||||      
T  1316708 cattaatatttttcgaattataaagttcaaagttcgcagggaaaataaaaaactaattggatggaaaaagaagacaaacaa-ttttttttgtctatgatg 1316610  T
Q  314 caaaatatctttggtagctgacgaacatgtcacataataattgttcttcgataataagaacatattatttccaat--aaaataaaaaagttaagagttca 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||    
T  1316609 caaaatatctttggtagctgacgaacatgtcacataataattgttcttcgataataagaacatattatttccaataaaaaaaaaaaaagttaagagttca 1316510  T
Q  412 aagtaaggtatgtaaatgaaatccataaatcaactcaacttattcaataaaaaagtagtgcaagcaattctttcttttaaacattttctctaatactcac 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1316509 aagtaaggtatgtaaatgaaatccataaatcaactcaacttattcaataaaaaagtagtgcaagcaattctttctttt-aacattttctctaatactcac 1316411  T
Q  512 tcttttattgatttaaatcattgtgagtgtacattttagaaatagaatccatataaaattgtgaaacatg 581  Q
    |||||||||| ||||||||||||| | |||||| |||||||||| |||||||| ||| ||||| ||||||    
T  1316410 tcttttattggtttaaatcattgtaaatgtacactttagaaatacaatccatacaaagttgtggaacatg 1316341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 564
Target Start/End: Original strand, 48374430 - 48374534
Alignment:
Q  460 aaaaaagtagtgcaagcaattctttcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaat 559  Q
    |||| |||||||| |||||  || |||||| |||| | ||||||||||||||||| || ||| ||||||| ||||||||| |||| ||| |||||||||     
T  48374430 aaaagagtagtgctagcaacactctcttttgaacactctctctaatactcactctcttgttggtttaaattattgtgagtatacactttggaaatagaac 48374529  T
Q  560 ccata 564  Q
    |||||    
T  48374530 ccata 48374534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 561
Target Start/End: Complemental strand, 6442333 - 6442253
Alignment:
Q  481 ctttcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatcc 561  Q
    ||||||||| |||| | ||| |||||||||||||||||||| |||||||||||||| || |||| |||  |||| ||||||    
T  6442333 ctttcttttgaacactatctttaatactcactcttttattggtttaaatcattgtgggtctacactttgaaaattgaatcc 6442253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 544
Target Start/End: Original strand, 44350831 - 44350877
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtaca 544  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  44350831 tctctaatactcactcttttgttggtttaaatcattgtgagtctaca 44350877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 19422850 - 19422901
Alignment:
Q  485 cttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||| |||| | ||||| |||||||||||||||||| ||||||||||||||    
T  19422850 cttttgaacactatctctgatactcactcttttattggtttaaatcattgtg 19422901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 536
Target Start/End: Complemental strand, 11824222 - 11824184
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  11824222 tctctaatactcactttcttattgatttaaatcattgtg 11824184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 535
Target Start/End: Complemental strand, 32205244 - 32205190
Alignment:
Q  481 ctttcttttaaacattttctctaatactcactcttttattgatttaaatcattgt 535  Q
    ||||||||| |||||  ||||||||||||||||| |||||  |||||||||||||    
T  32205244 ctttcttttgaacatcctctctaatactcactctcttattagtttaaatcattgt 32205190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Complemental strand, 39254248 - 39254178
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaat 554  Q
    |||||| |||| | ||| ||| ||||||||| |||||||||||||| |||||| || ||||||||| ||||    
T  39254248 tcttttgaacactctctttaacactcactctcttattgatttaaattattgtgggtctacattttaaaaat 39254178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 544
Target Start/End: Complemental strand, 46517442 - 46517396
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtaca 544  Q
    ||||||||||||| ||| |||||| ||||||||||||||||| ||||    
T  46517442 tctctaatactcattctcttattggtttaaatcattgtgagtctaca 46517396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 6580017 - 6580069
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||||||||||||||||| |||||| ||||||| ||||||    
T  6580017 tcttttgaacactctctctaatactcactctcttattggtttaaattattgtg 6580069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 22190090 - 22190054
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattg 534  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  22190090 tctctaatactcactcgtttattggtttaaatcattg 22190054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 554
Target Start/End: Complemental strand, 27888433 - 27888377
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaat 554  Q
    ||||||| ||||||||| |||||| |||||||||||||| || |||| |||| ||||    
T  27888433 tctctaacactcactctcttattggtttaaatcattgtgggtctacactttaaaaat 27888377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 27949438 - 27949386
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||||||||||||||||| |||||  ||||||||||||||    
T  27949438 tcttttgaacactctctctaatactcactctcttattagtttaaatcattgtg 27949386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 558
Target Start/End: Complemental strand, 33008251 - 33008195
Alignment:
Q  502 taatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    |||||||| ||||||||||| |||||||||||||| || ||||  || |||||||||    
T  33008251 taatactctctcttttattggtttaaatcattgtgggtctacacattggaaatagaa 33008195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 32598963 - 32599035
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatag 556  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |||| ||| |||||||    
T  32598963 tcttttaaacattctctttaatactcactcttttattgatttaaatcattgtgaatctacactttggaaatag 32599035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 484 - 544
Target Start/End: Original strand, 12753775 - 12753835
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtaca 544  Q
    |||||| |||| | |||||||||||| ||||||||||  ||||||||||||||||||||||    
T  12753775 tcttttcaacactctctctaatactcgctcttttattagtttaaatcattgtgagtgtaca 12753835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 558
Target Start/End: Original strand, 31116153 - 31116213
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    ||||||||||||||||| |||||| |||||||||||||| || ||||  || |||||||||    
T  31116153 tctctaatactcactctcttattggtttaaatcattgtgggtttacacattggaaatagaa 31116213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 32112732 - 32112784
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||||| ||||||||| ||||||| |||||| ||||||||||||||    
T  32112732 tcttttgaacattctctctaatattcactctcttattgttttaaatcattgtg 32112784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 548
Target Start/End: Complemental strand, 2676046 - 2675996
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtacatttt 548  Q
    ||||||||||||||| |||||||| |||||| ||||||| || ||||||||    
T  2676046 tctctaatactcacttttttattggtttaaaccattgtgggtctacatttt 2675996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 536
Target Start/End: Original strand, 10133191 - 10133225
Alignment:
Q  502 taatactcactcttttattgatttaaatcattgtg 536  Q
    |||||||||||||||||||| ||||||||||||||    
T  10133191 taatactcactcttttattggtttaaatcattgtg 10133225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 536
Target Start/End: Complemental strand, 34905487 - 34905449
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  34905487 tctctaatactcactctcttattggtttaaatcattgtg 34905449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 536
Target Start/End: Complemental strand, 1392776 - 1392740
Alignment:
Q  500 tctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  1392776 tctaatactcactctcttattggtttaaatcattgtg 1392740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 36471867 - 36471933
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatccata 564  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||  |||| |||||||||    
T  36471867 tctctaatactcactcttttattggtttaaatcattgtgagtttacattttgaaaattgaatccata 36471933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 484 - 564
Target Start/End: Complemental strand, 12989356 - 12989276
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatccata 564  Q
    |||||| |||| | ||||||||||||||||| |||||| |||||||||||||| || |||| ||  |||||||||||||||    
T  12989356 tcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacacttcggaaatagaatccata 12989276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 484 - 580
Target Start/End: Original strand, 25730454 - 25730550
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatccatataaaattgtgaaacat 580  Q
    ||||||||||||||| | ||||| |||||||||||||| ||||||||| ||||||| ||||  ||| |||||||| ||| |||| || |||| ||||    
T  25730454 tcttttaaacattttttttaatattcactcttttattggtttaaatcactgtgagtttacacgttaaaaatagaacccacataatatggtgagacat 25730550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 544
Target Start/End: Original strand, 26767773 - 26767836
Alignment:
Q  481 ctttcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtaca 544  Q
    ||||||||| |||| | | |||||||||||||||||||||| ||||||||||||||||| ||||    
T  26767773 ctttcttttgaacactctatctaatactcactcttttattggtttaaatcattgtgagtctaca 26767836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 27494480 - 27494516
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattg 534  Q
    |||||||||||||||||||||||||||||||||||||    
T  27494480 tctctaatactcactcttttattgatttaaatcattg 27494516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 564
Target Start/End: Complemental strand, 2122958 - 2122880
Alignment:
Q  486 ttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatccata 564  Q
    |||| ||||||||||||  |||||||||| ||||||||||||||||| ||||   |||| | |||||||||||| ||||    
T  2122958 ttttgaacattttctctggtactcactctcttattgatttaaatcatagtgaacttacactctagaaatagaatgcata 2122880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 562
Target Start/End: Original strand, 30718342 - 30718420
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatcca 562  Q
    ||||||| ||| | ||||||||| ||||| |||||||| ||||||||||||||||| |||| |||  ||||| ||||||    
T  30718342 tcttttagacactctctctaatattcacttttttattggtttaaatcattgtgagtctacactttgaaaatacaatcca 30718420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 570
Target Start/End: Original strand, 35316436 - 35316502
Alignment:
Q  504 atactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatccatataaaat 570  Q
    ||||||||||| ||||||||||||||||||||| || |||| |||| |||| ||||| | |||||||    
T  35316436 atactcactctcttattgatttaaatcattgtgggtctacaatttaaaaattgaatcaacataaaat 35316502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 14489554 - 14489606
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| || ||||||||||||||||| |||||||||| ||||||| ||||||    
T  14489554 tcttttgaaaattttctctaatactcattcttttattggtttaaattattgtg 14489606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 25238292 - 25238344
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||| ||||||||  ||||||| |||||||| ||||||||||||||    
T  25238292 tcttttaaacactttctctagcactcacttttttattggtttaaatcattgtg 25238344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 44274399 - 44274347
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||| ||| ||||||| ||||||||| |||||| ||||||||||||||    
T  44274399 tcttttaaatattctctctaacactcactctgttattggtttaaatcattgtg 44274347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 45554724 - 45554672
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||||| ||||||||||||||| | |||||| ||||||||||||||    
T  45554724 tcttttgaacattctctctaatactcactttcttattggtttaaatcattgtg 45554672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 4552856 - 4552907
Alignment:
Q  485 cttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||| |||||||| ||| ||||||||||| |||||| ||||||||||||||    
T  4552856 cttttgaacattttttctgatactcactctcttattggtttaaatcattgtg 4552907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 558
Target Start/End: Complemental strand, 10981668 - 10981609
Alignment:
Q  499 ctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    |||||||||||||||| |||||| |||||||||||||| || ||||  || |||||||||    
T  10981668 ctctaatactcactctcttattggtttaaatcattgtgggtctacacattggaaatagaa 10981609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 539
Target Start/End: Complemental strand, 19953561 - 19953506
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagt 539  Q
    |||||| ||||||||||| |||||||||| ||||||||  ||||||||| ||||||    
T  19953561 tctttttaacattttctccaatactcacttttttattggattaaatcatagtgagt 19953506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 536
Target Start/End: Complemental strand, 38464343 - 38464276
Alignment:
Q  469 gtgcaagcaattctttcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||| |||||| || |||||| |||| | ||||||||||| ||||| |||||| ||||||||||||||    
T  38464343 gtgctagcaatactctcttttgaacactctctctaatacttactctcttattggtttaaatcattgtg 38464276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 6980135 - 6980187
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| ||||||||||||||||||| |||||  || |||||||||||    
T  6980135 tcttttgaacactttctctaatactcactctcttattagttgaaatcattgtg 6980187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 558
Target Start/End: Original strand, 37451028 - 37451102
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    |||||||||||  ||||||||||||||||||||||||| |||||||||||| |||| |||| |||  ||||||||    
T  37451028 tcttttaaacaccttctctaatactcactcttttattggtttaaatcattgcgagtctacactttgaaaatagaa 37451102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 39471322 - 39471270
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  39471322 tcttttaaacattctctctaatactcactctcttattggtttaaatcattgtg 39471270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 500 - 556
Target Start/End: Original strand, 45081773 - 45081829
Alignment:
Q  500 tctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatag 556  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||    
T  45081773 tctaatactcactcttttattggtttaaattattgtgagtgtacactttggaaatag 45081829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 722325 - 722252
Alignment:
Q  481 ctttcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaat 554  Q
    ||||||||| |||| | ||||||||||||||||| |||||| |||||||||||||| || |||| |||| ||||    
T  722325 ctttcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttaaaaat 722252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 754592 - 754665
Alignment:
Q  481 ctttcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaat 554  Q
    ||||||||| |||| | ||||||||||||||||| |||||| |||||||||||||| || |||| |||| ||||    
T  754592 ctttcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttaaaaat 754665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 556
Target Start/End: Original strand, 40991601 - 40991676
Alignment:
Q  481 ctttcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatag 556  Q
    |||| |||| |||| | ||||| |||||||||||||||||| |||||||||||||| || |||| || ||||||||    
T  40991601 cttttttttgaacactctctctgatactcactcttttattggtttaaatcattgtgggtctacacttcagaaatag 40991676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 562
Target Start/End: Original strand, 24938430 - 24938508
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatcca 562  Q
    |||||| |||| ||||||||||||| ||||| |||||| |||||||||||||  || |||| |||| |||| |||||||    
T  24938430 tcttttcaacactttctctaatacttactctcttattggtttaaatcattgtaggtctacactttaaaaattgaatcca 24938508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 539
Target Start/End: Original strand, 34129429 - 34129470
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagt 539  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  34129429 tctctaatactcactcttttattggtttaaaccattgtgagt 34129470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 20454703 - 20454651
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||||||| ||||||||| |||||||||||||||||||||    
T  20454703 tcttttgaacactctctctaacactcactctgttattgatttaaatcattgtg 20454651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 533
Target Start/End: Original strand, 38537525 - 38537577
Alignment:
Q  481 ctttcttttaaacattttctctaatactcactcttttattgatttaaatcatt 533  Q
    ||||||||| |||| | ||||||||| ||| ||||||||||||||||||||||    
T  38537525 ctttcttttgaacactctctctaataatcattcttttattgatttaaatcatt 38537577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 531
Target Start/End: Complemental strand, 13070106 - 13070059
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatca 531  Q
    |||||| |||||||||||||| ||||||||||||||||| | ||||||    
T  13070106 tcttttgaacattttctctaacactcactcttttattgagtaaaatca 13070059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 520
Target Start/End: Complemental strand, 30033379 - 30033341
Alignment:
Q  482 tttcttttaaacattttctctaatactcactcttttatt 520  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  30033379 tttcttttaaacactatctctaatactcactcttttatt 30033341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 548
Target Start/End: Original strand, 31250924 - 31250962
Alignment:
Q  510 actcttttattgatttaaatcattgtgagtgtacatttt 548  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  31250924 actcttttattgatttaaatcattgtgggtctacatttt 31250962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 535
Target Start/End: Original strand, 45310977 - 45311014
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgt 535  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  45310977 tctctaatacttactctcttattgatttaaatcattgt 45311014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 4138998 - 4138950
Alignment:
Q  516 ttattgatttaaatcattgtgagtgtacattttagaaatagaatccata 564  Q
    |||||||||||||| |||| |||| |||| ||| |||||||||||||||    
T  4138998 ttattgatttaaattattgcgagtctacactttggaaatagaatccata 4138950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 8109121 - 8109069
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||||||||||||||| | |||||| ||||||||||||||    
T  8109121 tcttttgaacactctctctaatactcactttcttattggtttaaatcattgtg 8109069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 25719127 - 25719179
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| ||||||||||||||||||| | ||||  |||||||||||||    
T  25719127 tcttttgaacaatttctctaatactcactctctgattgggttaaatcattgtg 25719179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 558
Target Start/End: Original strand, 41153243 - 41153287
Alignment:
Q  514 ttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    |||||||| | ||||||||||||| |||||| |||||||||||||    
T  41153243 ttttattggtctaaatcattgtgaatgtacactttagaaatagaa 41153287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 41278784 - 41278744
Alignment:
Q  481 ctttcttttaaacattttctctaatactcactcttttattg 521  Q
    ||||||||||| |||||||| | ||||||||||||||||||    
T  41278784 ctttcttttaagcattttctttgatactcactcttttattg 41278744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 544
Target Start/End: Complemental strand, 50164560 - 50164500
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtaca 544  Q
    |||||| |||| | |||||||| |||||| | |||||| ||||||||||||||||| ||||    
T  50164560 tcttttgaacactctctctaatgctcactttcttattggtttaaatcattgtgagtctaca 50164500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 580
Target Start/End: Complemental strand, 138910 - 138832
Alignment:
Q  502 taatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatccatataaaattgtgaaacat 580  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||||||| |||| |||| |||| ||||| |||| ||||    
T  138910 taatacttactcttttattgatttaaatcattgtaagtttacattttaaaaattgaatacatacaaaatggtgagacat 138832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 558
Target Start/End: Original strand, 55452044 - 55452104
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    ||||||||||||||||||| |||| ||||||||||| ||||| |||| ||| |||||||||    
T  55452044 tctctaatactcactctttcattggtttaaatcattatgagtctacactttggaaatagaa 55452104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 2009159 - 2009094
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacatttta 549  Q
    ||||||||||||  ||||||||| ||| | |||||||||||||||| ||||||||| |||| ||||    
T  2009159 tcttttaaacatcctctctaatattcatttttttattgatttaaattattgtgagtctacacttta 2009094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 533
Target Start/End: Complemental strand, 48351601 - 48351552
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcatt 533  Q
    |||||| |||||||||||||||||||  ||| ||||||||||||||||||    
T  48351601 tcttttgaacattttctctaatactctttctcttattgatttaaatcatt 48351552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 562
Target Start/End: Complemental strand, 742103 - 742043
Alignment:
Q  502 taatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatcca 562  Q
    ||||||||| ||| |||||  |||||||||||||| || |||| |||||||||||||||||    
T  742103 taatactcattctcttattagtttaaatcattgtgggtctacactttagaaatagaatcca 742043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 554
Target Start/End: Original strand, 10948593 - 10948645
Alignment:
Q  502 taatactcactcttttattgatttaaatcattgtgagtgtacattttagaaat 554  Q
    |||||||||||||||||||| |||||||||||||| || |||| |||| ||||    
T  10948593 taatactcactcttttattggtttaaatcattgtgggtttacactttaaaaat 10948645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 558
Target Start/End: Original strand, 18427179 - 18427239
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    ||||||||||||||||| |||||| |||||||||||||| || |||| |||  ||||||||    
T  18427179 tctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaatagaa 18427239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 24734870 - 24734818
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||||||||||||||||| |||||| ||||||||||||||    
T  24734870 tcttttgaacactctctctaatactcactctcttattggtttaaatcattgtg 24734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 41451910 - 41451962
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||||||||||||||||| |||||| ||||||||||||||    
T  41451910 tcttttgaacactctctctaatactcactctcttattggtttaaatcattgtg 41451962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 558
Target Start/End: Complemental strand, 46450217 - 46450157
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    ||||||||||||||||| |||||| |||||||||||||| || |||| |||  ||||||||    
T  46450217 tctctaatactcactctcttattggtttaaatcattgtgggtctacactttgcaaatagaa 46450157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 24429054 - 24429092
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  24429054 tctctaatactcactattttattggtttaaatcattgtg 24429092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 536
Target Start/End: Complemental strand, 28529402 - 28529364
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  28529402 tctctaatactcactctcttattggtttaaatcattgtg 28529364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 29388623 - 29388693
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatccatataaa 568  Q
    ||||||| || |||||| ||||||| |||||||||||||||| |||| |||  |||| ||| |||||||||    
T  29388623 tctctaacacccactctcttattgacttaaatcattgtgagtctacactttgaaaattgaacccatataaa 29388693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 529
Target Start/End: Original strand, 49418418 - 49418479
Alignment:
Q  468 agtgcaagcaattctttcttttaaacattttctctaatactcactcttttattgatttaaat 529  Q
    |||||||||||  || |||||| |||||| |||||| || ||||||| ||||||||||||||    
T  49418418 agtgcaagcaacactctcttttgaacattctctctagtattcactctcttattgatttaaat 49418479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 558
Target Start/End: Complemental strand, 752539 - 752483
Alignment:
Q  502 taatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    ||||||||| ||| |||||  |||||||||||||| || |||| |||||||||||||    
T  752539 taatactcattctcttattagtttaaatcattgtgggtctacactttagaaatagaa 752483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 558
Target Start/End: Original strand, 2419481 - 2419553
Alignment:
Q  486 ttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    |||| |||| ||||| ||||||||||| | |||||| |||||||||||||| || ||||  || |||||||||    
T  2419481 ttttgaacactttctttaatactcactttcttattggtttaaatcattgtgggtctacacattggaaatagaa 2419553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 542
Target Start/End: Original strand, 8825012 - 8825052
Alignment:
Q  502 taatactcactcttttattgatttaaatcattgtgagtgta 542  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  8825012 taatactcactctcttattggtttaaattattgtgagtgta 8825052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 20493460 - 20493512
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | |||||| |||||||||| |||||| ||||||||||||||    
T  20493460 tcttttgaacactctctctattactcactctcttattggtttaaatcattgtg 20493512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 29588748 - 29588800
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||| ||| ||||||||| |||||||||||||||||||||    
T  29588748 tcttttgaacactctctataacactcactctcttattgatttaaatcattgtg 29588800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 581
Target Start/End: Original strand, 30355143 - 30355242
Alignment:
Q  484 tcttttaaacattttctctaatact--cactcttttattgatttaaatcattgtgagtgtacattttagaaatagaatccatataaaattgtgaaacatg 581  Q
    |||||| |||||| |||||||||||  |||| |||||||  ||||||||||||||| | ||||||||  ||||| ||  |||| ||||| ||| ||||||    
T  30355143 tcttttgaacattctctctaatactcacacttttttattagtttaaatcattgtgaatatacattttgaaaataaaactcatagaaaatggtggaacatg 30355242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 558
Target Start/End: Complemental strand, 46161098 - 46161038
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    ||||||||||||||||| |||||| ||||||||||| ||  | |||| ||| |||||||||    
T  46161098 tctctaatactcactctcttattggtttaaatcattatggatctacactttggaaatagaa 46161038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 52123971 - 52124023
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||||||||||||||| | |||||| ||||||||||||||    
T  52123971 tcttttgaacactctctctaatactcactttcttattggtttaaatcattgtg 52124023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 536
Target Start/End: Original strand, 16948551 - 16948596
Alignment:
Q  491 aacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  16948551 aacattttctctaatactcactctcttattgatttaaatcattgtg 16948596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 498 - 558
Target Start/End: Original strand, 12767357 - 12767417
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||| |||| ||||||||    
T  12767357 tctctaatactcactcttttattggtttaaatcattatgagtctacactttaaaaatagaa 12767417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 484 - 548
Target Start/End: Complemental strand, 15906575 - 15906511
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacatttt 548  Q
    |||||| |||||| ||||||||||||| || ||||||||||||||||||||| | | ||||||||    
T  15906575 tctttttaacattatctctaatactcattcgtttattgatttaaatcattgtaaatctacatttt 15906511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 536
Target Start/End: Complemental strand, 51732440 - 51732390
Alignment:
Q  486 ttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||| ||||||    
T  51732440 ttttgaacgttttctctaatactcactcttttattggtttaaattattgtg 51732390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 931532 - 931475
Alignment:
Q  491 aacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacatttt 548  Q
    |||| ||| ||||||| |||||||||||||| |||||||||||||| ||||| |||||    
T  931532 aacactttttctaatattcactcttttattggtttaaatcattgtgggtgtatatttt 931475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 8741238 - 8741290
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| ||||||||||||||||||| |||||  ||||||||||||||    
T  8741238 tcttttgaacaatttctctaatactcactctcttattagtttaaatcattgtg 8741290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 26980277 - 26980329
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||| ||||||||||||| |||||||||||||||||||||    
T  26980277 tcttttcaacactctctataatactcactctcttattgatttaaatcattgtg 26980329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 554
Target Start/End: Original strand, 33059898 - 33059978
Alignment:
Q  474 agcaattctttcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaat 554  Q
    |||||| || |||||| |||| ||| |||| ||| |||||| |||||| |||||| ||||||||||||||| |||| ||||    
T  33059898 agcaatactctcttttgaacactttttctagtacccactctcttattggtttaaaacattgtgagtgtacactttaaaaat 33059978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 41948161 - 41948213
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||||||| ||||||||| |||||||||||||||||||||    
T  41948161 tcttttgaacactctctctaacactcactctcttattgatttaaatcattgtg 41948213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 535
Target Start/End: Original strand, 39974215 - 39974266
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgt 535  Q
    |||||| |||||| | ||||||||||||||| |||||| |||||||||||||    
T  39974215 tcttttgaacattctttctaatactcactctcttattggtttaaatcattgt 39974266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 544
Target Start/End: Complemental strand, 15928706 - 15928660
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtgagtgtaca 544  Q
    |||||||||||||||||||||||| ||||||||| ||| ||| ||||    
T  15928706 tctctaatactcactcttttattggtttaaatcactgtaagtctaca 15928660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 538
Target Start/End: Complemental strand, 25543504 - 25543450
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgag 538  Q
    |||||| |||| | ||||||||||||||| | |||||| ||||||||||||||||    
T  25543504 tcttttgaacactctctctaatactcactatcttattggtttaaatcattgtgag 25543450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 536
Target Start/End: Original strand, 37552982 - 37553016
Alignment:
Q  502 taatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||||| |||||||||||||||||||||    
T  37552982 taatactcactctcttattgatttaaatcattgtg 37553016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 534
Target Start/End: Original strand, 19101597 - 19101666
Alignment:
Q  465 agtagtgcaagcaattctttcttttaaacattttctctaatactcactcttttattgatttaaatcattg 534  Q
    |||||||| |||| | || |||||| |||| | ||||||||||||||| | |||||| ||||||||||||    
T  19101597 agtagtgctagcactactctcttttgaacactctctctaatactcactttcttattggtttaaatcattg 19101666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 536
Target Start/End: Complemental strand, 33193208 - 33193163
Alignment:
Q  491 aacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||| ||||||||||||||| ||| |||||| ||||||||||||||    
T  33193208 aacactttctctaatactcattctcttattggtttaaatcattgtg 33193163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 8899179 - 8899127
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||||||||||||||||| |||||| ||||||| ||||||    
T  8899179 tcttttgaacactctctctaatactcactctcttattggtttaaattattgtg 8899127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 36160333 - 36160281
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||| ||||||||||| ||||| ||||||||| | |||||||| ||||    
T  36160333 tcttttaaatattttctctaacactcattcttttattaagttaaatcaatgtg 36160281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 6098792 - 6098844
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  6098792 tcttttaaacattctctctaatactcactctcttattgatttaaattattgtg 6098844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 484 - 544
Target Start/End: Complemental strand, 16983559 - 16983499
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtaca 544  Q
    |||||| |||| | ||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  16983559 tcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgagtctaca 16983499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 1977202 - 1977240
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  1977202 tctctaatactcactcttttattggtttaaatcattgtg 1977240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 535
Target Start/End: Original strand, 5095776 - 5095826
Alignment:
Q  485 cttttaaacattttctctaatactcactcttttattgatttaaatcattgt 535  Q
    |||||||||||  ||||||||||||||||| |||||| |||||||||||||    
T  5095776 cttttaaacatcctctctaatactcactctcttattggtttaaatcattgt 5095826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 500 - 558
Target Start/End: Original strand, 7493373 - 7493431
Alignment:
Q  500 tctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    ||||||||||||||| |||||| ||||||||||||||||| |||| |||  ||||||||    
T  7493373 tctaatactcactctcttattggtttaaatcattgtgagtctacactttgaaaatagaa 7493431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 5727400 - 5727331
Alignment:
Q  481 ctttcttttaaacattttctctaatactcactcttttattgatttaaatcattgt-gagtgtacatttta 549  Q
    ||||||||||||||   |||||| |||||||| |||||||| ||||||||||||| |||| |||||||||    
T  5727400 ctttcttttaaacaccctctctagtactcacttttttattggtttaaatcattgtagagtctacatttta 5727331  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 36804854 - 36804906
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||||| ||||||||||| ||||| |||||||||||||| ||||||    
T  36804854 tcttttcaacattctctctaatacttactctcttattgatttaaattattgtg 36804906  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 536
Target Start/End: Original strand, 3099631 - 3099673
Alignment:
Q  494 attttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||||  |||||||||||||| ||||||||||||||    
T  3099631 attttctctaattttcactcttttattggtttaaatcattgtg 3099673  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 17499262 - 17499300
Alignment:
Q  498 tctctaatactcactcttttattgatttaaatcattgtg 536  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  17499262 tctctaatactcactctcttattggtttaaatcattgtg 17499300  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 558
Target Start/End: Complemental strand, 27977 - 27903
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    |||||| |||| | ||| ||||||||||||| |||||| |||||||||||||| || |||| ||| |||||||||    
T  27977 tcttttgaacactctctttaatactcactctcttattggtttaaatcattgtgggtctacactttggaaatagaa 27903  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 558
Target Start/End: Original strand, 17434865 - 17434938
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    |||||||||||| | |||||||  |||||||||||||| ||||||||| |||| || |||| |||||||||||||    
T  17434865 tcttttaaacatct-ctctaatgttcactcttttattggtttaaatcaatgtgggtctacactttagaaatagaa 17434938  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 2935494 - 2935449
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaat 529  Q
    |||||| |||| |||||||||||||||||||||||||| |||||||    
T  2935494 tcttttgaacaatttctctaatactcactcttttattggtttaaat 2935449  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 533
Target Start/End: Original strand, 28223791 - 28223840
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcatt 533  Q
    |||||| |||||  |||||||||||||||||||||||| |||||||||||    
T  28223791 tcttttgaacatcctctctaatactcactcttttattggtttaaatcatt 28223840  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 558
Target Start/End: Complemental strand, 43405543 - 43405484
Alignment:
Q  499 ctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaatagaa 558  Q
    |||| ||| ||||||| ||||||||||||||||||||| || |||| ||| |||||||||    
T  43405543 ctctgatattcactctcttattgatttaaatcattgtgggtctacactttggaaatagaa 43405484  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 28490737 - 28490789
Alignment:
Q  484 tcttttaaacattttctctaatactcactcttttattgatttaaatcattgtg 536  Q
    |||||| |||| | ||||||||||||||||| |||||| ||||||| ||||||    
T  28490737 tcttttgaacactctctctaatactcactctcttattggtttaaattattgtg 28490789  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 554
Target Start/End: Original strand, 28611819 - 28611863
Alignment:
Q  510 actcttttattgatttaaatcattgtgagtgtacattttagaaat 554  Q
    ||||||||||||||||||||||||||| || |||| |||| ||||    
T  28611819 actcttttattgatttaaatcattgtgcgtctacactttaaaaat 28611863  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 204725 - 204793
Alignment:
Q  486 ttttaaacattttctctaatactcactcttttattgatttaaatcattgtgagtgtacattttagaaat 554  Q
    |||| |||||| |||||| ||||||||||||||||| |||| || ||||| ||| |||| |||| ||||    
T  204725 ttttgaacattctctctagtactcactcttttattggtttatataattgtaagtctacaatttaaaaat 204793  T

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