View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13692_low_5 (Length: 440)
Name: NF13692_low_5
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 432
Target Start/End: Complemental strand, 10218634 - 10218212
Alignment:
| Q |
7 |
gtgatagaaaatattttaaaggtgagatttgaaaaacacatgatagaacagaagtaatattatcaaacaagacaacaaggaattggacctaataccatcc |
106 |
Q |
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| T |
10218634 |
gtgatagaaaatattttaaaggtgagatttgaaaaacatatgatagaacagaagtaatattatcaaacaagacaacgaggaattggacctaataccatcc |
10218535 |
T |
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| Q |
107 |
tttcttctagattaagtaatcctataaccaacaatattaatgctagaagctaattaagatatgttgataatcaactaaagtaacaactaattatggaaag |
206 |
Q |
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| T |
10218534 |
tttcttctagattaagtaatcctataaccaacaatattaatgctagaagctaattaagatatgttgataatcaactaaagtaactactaattatggaaag |
10218435 |
T |
|
| Q |
207 |
caaaagaagatatttgaataatatagttagctatttagagaggaaaggaaagtacttacctggtaattaagcataaacacgatttgagaagtttggtatc |
306 |
Q |
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| T |
10218434 |
caaaagaagatatttg---aatatagttagctatttagagaggaaaggaaagtacttacctggtaattaagcataaacacgatttgagaagtttggtatc |
10218338 |
T |
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| Q |
307 |
aacaatataaattccttaattataatgagttatatatgttgccttctattctttgttttctattggttttgatatttttgttttggttattaattggtgc |
406 |
Q |
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| T |
10218337 |
aacaatataaattccttaattataatgagttatatatgttgccttctattctttgttttctattggttttgatatttttgttttggttattaattggtgc |
10218238 |
T |
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| Q |
407 |
atgtgtatgtttaaatgatgatgatg |
432 |
Q |
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| T |
10218237 |
atgtgtatgtttaaatgatgatgatg |
10218212 |
T |
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