View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13692_low_6 (Length: 414)
Name: NF13692_low_6
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 31423786 - 31424180
Alignment:
| Q |
1 |
tgtggtgattatattgtggtgtattcacgttggttttgtgtggttgtttggtgtggtactgttagcggtggagcgagatggttgcgtaggtttgtgtagt |
100 |
Q |
| |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
31423786 |
tgtggtgattatgttgtggtgtagtcacgttggttttgtgtggttgtttggtgtggtactgttagcagtggagcgagatggttgtgtaggtttgtgtagt |
31423885 |
T |
|
| Q |
101 |
tgtgtgtgatggtttgtagcgttcggatggggtggtcgtggataattttgactccgatttggcattgatacgattgatagacaagagctgattaagtggg |
200 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31423886 |
ggtgtgtgatggtttgtagcgttcggatggggtgattgtggataatttggactccgatttggcattgatacgattgatagacaagagctgattaagtggg |
31423985 |
T |
|
| Q |
201 |
ggtggttgatgttgtttaggtagggaggtggatgttttttggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31423986 |
ggtggttgatgttgtttaggtagggaggtggatgttt-------ttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttg |
31424078 |
T |
|
| Q |
301 |
ggtctgtatccgtcgtcgctagctcttggtgccttttggttgttttgtgtatgggtgcttgagtctgggtggttttgagttgagccttttccttttctga |
400 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31424079 |
ggtctgtatccatcgtcgctagctcttggtgccttttggttgttttgtgtatgggtgcttgagtctgggtggttttgagttgagccttttccttttctga |
31424178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 185 - 401
Target Start/End: Original strand, 24712244 - 24712462
Alignment:
| Q |
185 |
gagctgattaagtgggggtggttgatgttgtttaggtagggaggtggatgtttt-ttggtgttttggtggatggtagtgtactcttggtgtttctgttgt |
283 |
Q |
| |
|
||||||||||||||||| |||| || ||| |||||||||||||||||||||||| |||||||| | |||| |||||||| ||||||||||||||||||| |
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| T |
24712244 |
gagctgattaagtgggg-tggtagacgttttttaggtagggaggtggatgttttattggtgttgttgtgggtggtagtgagctcttggtgtttctgttgt |
24712342 |
T |
|
| Q |
284 |
aggctgcctttg-tcttgggtctgtatccgtcgtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgcttgagtctgggtggtttt-gagt |
380 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||||||||||| ||||| |||| |||||||| ||| ||||||||| |||||||||| ||| |
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| T |
24712343 |
aggctgcctttgtttttgggtccatatccgtcgtcgctagctcttggtg-cttttagttgattttgtgtttggttgcttgagtgcgggtggttttcgagc |
24712441 |
T |
|
| Q |
381 |
tgagccttttccttttctgat |
401 |
Q |
| |
|
|||||||||||||| |||||| |
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| T |
24712442 |
tgagccttttccttctctgat |
24712462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 359
Target Start/End: Complemental strand, 31503772 - 31503540
Alignment:
| Q |
129 |
ggggtggtcgtggataattttgactccgatttggcattgatacgattgatagacaagagctgattaagtgggggtggttgatgttgtttaggtagggagg |
228 |
Q |
| |
|
|||||||||||||||||| | ||||| ||| || | || || ||||| ||| |||||||||||| |||| |||| || ||| ||||||||| ||| |
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| T |
31503772 |
ggggtggtcgtggataatctagactcagatctgaagtcgaaacatttgatggacgagagctgattaacaggggatggtagacattggttaggtaggaagg |
31503673 |
T |
|
| Q |
229 |
tggatgttttt-tggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagctctt |
327 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| |||| | ||||||| |||| || |||| ||| ||| ||| |||||| | |||||||||||| |
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| T |
31503672 |
tggatgtttttatggtgttttggtggatggtggtgagctctagatgtttctattgtttgccgcctctgttttgagtccatatccgccatcgctagctctt |
31503573 |
T |
|
| Q |
328 |
ggtgccttttggttg-ttttgtgtatgggtgct |
359 |
Q |
| |
|
| ||| ||||||||| |||||| | |||||||| |
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| T |
31503572 |
gttgcattttggttgcttttgtatttgggtgct |
31503540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 3679052 - 3679149
Alignment:
| Q |
189 |
tgattaagtgggggtggttgatgttgtttaggtagggaggtggatgttttttggtgttttggtggatggtagtgtactcttggtgtttctgttgtagg |
286 |
Q |
| |
|
|||||||| ||||||||| || |||||||||||||||||||| |||||| || |||||| |||| |||| ||| || ||||||||||||||||||| |
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| T |
3679052 |
tgattaagagggggtggtagacgttgtttaggtagggaggtgaatgtttaatgatgtttttgtgggtggtggtgagctattggtgtttctgttgtagg |
3679149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 17820158 - 17820059
Alignment:
| Q |
298 |
ttgggtctgtatccgtcgtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgcttgagtctgggtggtttt-gagttgagccttttccttt |
395 |
Q |
| |
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||||||| |||| |||||||||| |||||||||| ||||||||| |||||||| |||| |||||||| ||||||||||| ||| | ||||||||||||| |
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| T |
17820158 |
ttgggtccatatctgtcgtcgctaactcttggtgc-ttttggttgattttgtgtttgggagcttgagtgtgggtggttttcgagcttagccttttccttt |
17820060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 359
Target Start/End: Original strand, 5746424 - 5746519
Alignment:
| Q |
264 |
actcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagctcttggtgccttttggttgttttgtgtatgggtgct |
359 |
Q |
| |
|
|||||| ||||||||||||| | |||||||| |||| || |||||||||||||||||||||| ||| ||| ||||| ||||||| |||||||| |
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| T |
5746424 |
actctttgtgtttctgttgttgatcgcctttgtgttggatccatatccgtcgtcgctagctcttgttgcgtttgggttgctttgtgtttgggtgct |
5746519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 26386635 - 26386589
Alignment:
| Q |
185 |
gagctgattaagtgggggtggttgatgttgtttaggtagggaggtgg |
231 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||| |||||||| |
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| T |
26386635 |
gagctgattaagagggggtggtagatgttgtttaggtaaggaggtgg |
26386589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 25658596 - 25658554
Alignment:
| Q |
184 |
agagctgattaagtgggggtggttgatgttgtttaggtaggga |
226 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
25658596 |
agagctgattaagagggggtggttgatgttatttaggtaggga |
25658554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 38639853 - 38639809
Alignment:
| Q |
198 |
gggggtggttgatgttgtttaggtagggaggtggatgttttttgg |
242 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||||| |||| |
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|
| T |
38639853 |
gggggtggttggtgttgtttaggtgaggaggtggatgtttgttgg |
38639809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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