View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13692_low_7 (Length: 404)
Name: NF13692_low_7
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 44754063 - 44753839
Alignment:
| Q |
1 |
aaggtccttcagtaactaataagatgacaataagctcatctagcatccaggacgcaccatagctagcatacggcaagcaaatccacaccaatacacc-aa |
99 |
Q |
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| T |
44754063 |
aaggtccttcagtaactaataagatgacaataatctcatccagcatccaggaagcaccatagctagcatatggcaagcaaatccacaccattataccaaa |
44753964 |
T |
|
| Q |
100 |
ttctatttgagacttgaagctaaaatatccaagtgtcatttaacgcaacgcagacctgctataattccatcaagaaaatatacaccaagaccatggggca |
199 |
Q |
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| T |
44753963 |
ttctatttgagatttgaagctaaa--atccaagtgtcctttaagccaacgctgatctgctataatgcgaacaagaaaaaatacaccaaggccatggaaca |
44753866 |
T |
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| Q |
200 |
gcagcagagtgcacttctcagacacct |
226 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
44753865 |
gcagcagagtgcacttctcaaacacct |
44753839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 221 - 350
Target Start/End: Complemental strand, 44753763 - 44753634
Alignment:
| Q |
221 |
acaccttcaatgttgcgcagaacaccccctacacaacagctttgcctacccgaattcctatgctcaaaacagccaggacaaaagcgcttgacagactacg |
320 |
Q |
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| T |
44753763 |
acacctttattgttgcgcagaacaccccttataataaagttttgcctacccgaactgctatgctcaaaacagccaagaaaaaagcgcttgacagactaca |
44753664 |
T |
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| Q |
321 |
catgacagaaaacaccggcaaacaaaaact |
350 |
Q |
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| T |
44753663 |
catgaccgaaaacactggtaaacaaaaact |
44753634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 268 - 389
Target Start/End: Original strand, 27715172 - 27715294
Alignment:
| Q |
268 |
acccgaattcctatgctcaaaacagccaggacaaaagcgcttgacagactacgcatgacagaaaacaccggcaaacaaaaactgcacaaactaacag-ta |
366 |
Q |
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||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27715172 |
acccgaattgcaatgctcaaaacagccaggacaaaagcgctttacagactgcgcatgacagaaaacaccggcaaacaaaaactgcacaaactaacagata |
27715271 |
T |
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| Q |
367 |
tcaattcaggaaccacaccactc |
389 |
Q |
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||||||||||||||||||||||| |
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| T |
27715272 |
tcaattcaggaaccacaccactc |
27715294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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