View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13692_low_9 (Length: 383)
Name: NF13692_low_9
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 44988098 - 44987758
Alignment:
| Q |
18 |
atctacatctaaatcacgagctctcaagaatcttctaatcatcaaatcatctacttcctacccatcatcaaggctcaaatcaattccaatacttcctaat |
117 |
Q |
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| T |
44988098 |
atctacatctaaatcacgagctctcaagaatcttctaatcatcaaatcatctacttcctacccatcatcaaggctcaaatcaattccaatacttcctaat |
44987999 |
T |
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| Q |
118 |
tagtaatgtaatagtacaaaacaaacaacatggccatcataaattttgtatttttatcataatccaaaaaattaataaattaaaaagtcaaactttggga |
217 |
Q |
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| T |
44987998 |
tagtaatgtaatagtacaaaacaaacaacatggccatcataaattttgtatttttatcataatccaaaaaattaataaattaaaaagtcaaactttggga |
44987899 |
T |
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| Q |
218 |
cattgaac-ttgtgtcagagtgaaaaacagatccaaatcggtacaacatagttggcaactaattttgaacaaagtgcttgtagagtagttgcaaaaagtg |
316 |
Q |
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| T |
44987898 |
cattgaactttgtgtcagagtgaaaaacagatccaaatcggtacaacatagttggcaactaattttgaacaaagtgctt-----gtagttgcaaaaagtg |
44987804 |
T |
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| Q |
317 |
gcaaagattaactgttttatcaaaactaaatacgatgatgtcatgt |
362 |
Q |
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| T |
44987803 |
gcaaagattaactgttttatcaaaattaaatacgatgatgtcatgt |
44987758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 40118862 - 40118815
Alignment:
| Q |
22 |
acatctaaatcacgagctctcaagaatcttctaatcatcaaatcatct |
69 |
Q |
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| T |
40118862 |
acatctaaatcacgagctcgtaagaatcttctaatcatcaaatcatct |
40118815 |
T |
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