View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13693_high_5 (Length: 370)
Name: NF13693_high_5
Description: NF13693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13693_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 240 - 361
Target Start/End: Complemental strand, 32090666 - 32090545
Alignment:
| Q |
240 |
taatttgagaaactcacctcaattagtattgatccgtcaagattttgatgaagtgtgtgggttcaccaagcactaaaccatcattcttctccctttactc |
339 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||| |
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| T |
32090666 |
taatttgagaaaatcacctcaattagtattgatccgtcaaggttttgatgaagtgtgtgggttcaccaagctctaaaccttcattcttcaccttttactc |
32090567 |
T |
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| Q |
340 |
ctttaaaacgagcccttcatct |
361 |
Q |
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||| |||||||||||||||||| |
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| T |
32090566 |
cttcaaaacgagcccttcatct |
32090545 |
T |
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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 329
Target Start/End: Original strand, 35091909 - 35091998
Alignment:
| Q |
240 |
taatttgagaaactcacctcaattagtattgatccgtcaagattttgatgaagtgtgtgggttcaccaagcactaaaccatcattcttct |
329 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||| ||||| |||| |
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| T |
35091909 |
taatttgagaaactcacctcaattagtagaaatccctcaagattttgatgaagtgtgtgggttcaccaagctccaaaccttcattattct |
35091998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 329
Target Start/End: Original strand, 27409480 - 27409569
Alignment:
| Q |
240 |
taatttgagaaactcacctcaattagtattgatccgtcaagattttgatgaagtgtgtgggttcacc-aagcactaaaccatcattcttct |
329 |
Q |
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|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||| |
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| T |
27409480 |
taatatgagaaactcacctcaattagtatatatcc-tcaagattttgatgaagtgtgtgggttcaccaaagctctaaactgtcattcttct |
27409569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 31979256 - 31979167
Alignment:
| Q |
240 |
taatttgagaaactcacctcaattagtattgatccgtcaagattttgatgaagtgtgtgggttcacc-aagcactaaaccatcattcttct |
329 |
Q |
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|||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||| |
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| T |
31979256 |
taatatgagaaactcacatcaattagtatatatcc-tcaagattttgatgaagtgtgtgggttcaccaaagctctaaactgtcattcttct |
31979167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 7652633 - 7652695
Alignment:
| Q |
281 |
attttgatgaagtgtgtgggttcaccaagcactaaaccatcattcttc-tccctttactcctt |
342 |
Q |
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|||||||| |||| |||||||||||||||| || |||| ||||||||| |||||||||||||| |
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| T |
7652633 |
attttgataaagtatgtgggttcaccaagctctgaaccttcattcttcttccctttactcctt |
7652695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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