View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13693_low_1 (Length: 512)
Name: NF13693_low_1
Description: NF13693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13693_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 17 - 502
Target Start/End: Complemental strand, 33050826 - 33050341
Alignment:
| Q |
17 |
agaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaagatttctttccacaagatatgattgctagcgataaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050826 |
agaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaagatttctttccacaagatatgattgctagcgataaa |
33050727 |
T |
|
| Q |
117 |
aaatatcacaatattcatttacagaagatcatattcttttattgcacaaatttactgtagacactatttgatttaacctgcgatgactcgttttgcagca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33050726 |
aaatatcacaatattcatttacagaagatcatattcttttattgcacaaatttactgtagacactatttgatttaacctgcaatgactcgttttgcagca |
33050627 |
T |
|
| Q |
217 |
tcttacttgacattagagtgtttgcattacaattatagagcacttattattatgttcacattgaaagagtggaagtccggtaaactagcaaagagtaaag |
316 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33050626 |
tcttacttgaaattagagtgtttgcataacaattatagagcacttattattatgttcacattgaaagagtggaagtccggtaaacttgcaaagagtaaag |
33050527 |
T |
|
| Q |
317 |
atgggatcattgtggaaaaggtggttaaggataacgtgttttggaaaaatgttatgaattgcatgagtggtgttttcctccttacgtgcgtggtagcctc |
416 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33050526 |
atgggatcattgtggaaaaggcggttaaggataacgtgttttggaaaaatgttatgaattgcatgaggggtgttttcctccttacgtgcgtggtagcctc |
33050427 |
T |
|
| Q |
417 |
cctgtgacggcttccccttgactcctcttccttgcaactctgtctcttcttttctctttgacaagcttaactgtgtggtctctgtg |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050426 |
cctgtgacggcttccccttgactcctcttccttgcaactctgtttcttcttttctctttgacaagcttaactgtgtggtctctgtg |
33050341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Complemental strand, 42807589 - 42807121
Alignment:
| Q |
17 |
agaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaagatttctttccacaagatatgattgctagcgataaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42807589 |
agaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaagatttctttccacaagatatgattgctagcgataaa |
42807490 |
T |
|
| Q |
117 |
aaatatcacaatattcatttacagaagatcatattcttttattgcacaaatttactgtagacactatttgatttaacctgcgatgactcgttttgcagca |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42807489 |
a----------tattcatttacagaagatcatattcttttattgcacaaatttactgtagacactatttgatttaacctgcaatgactcgttttgcagca |
42807400 |
T |
|
| Q |
217 |
tcttacttgacattagagtgtttgcattacaattatagagcacttattattatgttcacattgaaagagtggaagtccggtaaactagcaaagagtaaag |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42807399 |
tcttacttgatattagagtgtttgcattacaattatagagcacttattattatgttcacattgaaagagtggaagtccggtaaacttgcaaagagtaaag |
42807300 |
T |
|
| Q |
317 |
atgggatcattgtggaaaaggtggttaaggataacgtgttttggaaaaatgttatgaattgcatgagtggtgttttcctccttacgtgcgtggtagcctc |
416 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42807299 |
atgggatcattgtggaaaaggcggttaaggataacgtgttttggaaaaatgttatgaattgcatgaggggtgttttcctccttacgtgcgtggtagcctc |
42807200 |
T |
|
| Q |
417 |
cctgtgacggcttccccttgactcctcttccttgcaactctgtctcttcttttctctttgacaagcttaactgtgtggt |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42807199 |
cctgtgacggcttccccttgactcctcttccttgcaactctgtttcttcttttctctttgacaagcttaactgtgtggt |
42807121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 42765226 - 42764859
Alignment:
| Q |
17 |
agaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaagatttctttccacaa-gatatgattgctagcgataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
42765226 |
agaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttgaaattttttgagaagatttctttccacaaagatatgatttatagtgataa |
42765127 |
T |
|
| Q |
116 |
aaaatatcacaatattcatttacagaagatcatattcttttattgcacaaatttactgtagacactatttgatttaacctgcgatgactcgttttgcagc |
215 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
42765126 |
aaaatatcacaacattcatttacacaagatcatattcttttattgcacaaatttactgtagacactatttgatttaacctgcaacga------------- |
42765040 |
T |
|
| Q |
216 |
atcttacttgacattagagtgtttgcattacaattatagagcacttattattatgttcacattgaaagagtggaagtccggtaaactagcaaagagtaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
42765039 |
--cttacttgacattagagtgtttgcatgacaattacagagcacttattattatgttcacattgaaagaatggaagtccggtaaacttgcaaagagtaaa |
42764942 |
T |
|
| Q |
316 |
gatgggatcattgtggaaaaggtggttaaggataacgtgttttggaaaaatgttatgaattgcatgagtggtgttttcctccttac |
401 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |||||| |
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| T |
42764941 |
gatgggatcattgtggaaaaggcggttaaggataac---ttttggaaaaatgttatgatttgcatgaggggtgttttcccccttac |
42764859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 413 - 502
Target Start/End: Complemental strand, 42764453 - 42764367
Alignment:
| Q |
413 |
cctccctgtgacggcttccccttgactcctcttccttgcaactctgtctcttcttttctctttgacaagcttaactgtgtggtctctgtg |
502 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42764453 |
cctccctgtgacggcttccccctgactcctcttccttgcaactctgt---ttcttttctctttgacaagcttaactgtgtggtctctgtg |
42764367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 15658821 - 15658881
Alignment:
| Q |
22 |
ttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaaga |
82 |
Q |
| |
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|||||||||||||||||||| |||||||| || ||| | |||||||| |||||||||||| |
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|
| T |
15658821 |
ttgtattggacaccatgtgctgctcattgtattgacttgatgttggaggattttgagaaga |
15658881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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