View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13693_low_10 (Length: 237)
Name: NF13693_low_10
Description: NF13693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13693_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6084199 - 6084420
Alignment:
| Q |
1 |
tcagctaaaccaatcccatgattttgataaagccctagtgtcaatgacacattactattattattactactatgattgctattattgcttccactaccaa |
100 |
Q |
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| T |
6084199 |
tcagctaaaccaatcccatgattttgataaagccctagtgtcaatgacacattactattattattactactatgattgctattattgcttccactaccaa |
6084298 |
T |
|
| Q |
101 |
caatattcattccaacacccacatgttgaaaaggtagactcat---ttgttgttgttgctgttgatgttgtccttgactcctgattggtatgttaggaat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6084299 |
caatattcattccaacacccacatgttgaaaaggtagactcatttgttgttgttgttgttgttgatgttgtccttgactcctaattggtatgttaggaat |
6084398 |
T |
|
| Q |
198 |
ttcatttacagcgcgcttgtaa |
219 |
Q |
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||||||||| |||||||||||| |
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| T |
6084399 |
ttcatttacggcgcgcttgtaa |
6084420 |
T |
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