View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13693_low_11 (Length: 210)
Name: NF13693_low_11
Description: NF13693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13693_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 14596855 - 14597027
Alignment:
| Q |
20 |
cttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgt |
119 |
Q |
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| T |
14596855 |
cttagcacctggtgtagtcgatcagtaagattaattggtgcagatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgt |
14596954 |
T |
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| Q |
120 |
gcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgt |
192 |
Q |
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| T |
14596955 |
gcatgcggtaccctgtaaccacatcctctgtcactgacccataaatccatcccactctttctccccattctgt |
14597027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 14611715 - 14611543
Alignment:
| Q |
20 |
cttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgt |
119 |
Q |
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| T |
14611715 |
cttagcacctggtgtagtcgatcagtaaggttaattggtgctgatccgcgaaatgcatctcgcttggtcacgcaatatacagaacgccatccacggttgt |
14611616 |
T |
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| Q |
120 |
gcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgt |
192 |
Q |
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| T |
14611615 |
gcatgcggtaacctgtaacgacgtcctctgtcactgatccataaatccatcccactctgtctccccattctgt |
14611543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 15417158 - 15417244
Alignment:
| Q |
106 |
ccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgt |
192 |
Q |
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| T |
15417158 |
ccatccacggttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatccaacctattctatctccccattctgt |
15417244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 12192718 - 12192842
Alignment:
| Q |
65 |
ccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaa |
164 |
Q |
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||||| || ||||| | |||||| |||||||| ||||| | |||||| | ||||||||| | || ||||| || || || || || || ||||| |||| |
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| T |
12192718 |
ccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggttaccgacccgtaaa |
12192817 |
T |
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| Q |
165 |
tccatcccactctttctccccattc |
189 |
Q |
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| T |
12192818 |
tccatccaactctatctccccattc |
12192842 |
T |
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