View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13693_low_2 (Length: 466)
Name: NF13693_low_2
Description: NF13693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13693_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 9692379 - 9692622
Alignment:
| Q |
1 |
tgactcaaccatcatgttttgatgaaaaaggcaaggaaaattgcttgtacaaattgaagaaatctctgtatggctcatatcagacacctagagcatggaa |
100 |
Q |
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| T |
9692379 |
tgactcaaccatcatgttttgatgaaaaaggcaaggaaaattgcttgtacaaattgaagaaatctctgtatggctcatatcagacacctagagcatggaa |
9692478 |
T |
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| Q |
101 |
caagaagatcgatgggttccttcttcaacaaggttttgtaaaatgtgtacatgtgcatatcttatactgcaaaaactcaacaaataagcacaaactaatt |
200 |
Q |
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| T |
9692479 |
caagaagatcgattggttccttcttcaacaaggttttgtaaaatgtgtacatgtgcatatcttatactgcaaaaactcaacaaataagcacaaactaatt |
9692578 |
T |
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| Q |
201 |
gtaagctaaatatgttggtgacatgattgtgaccggcaacaatga |
245 |
Q |
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| T |
9692579 |
gtaagct-aatatgttggtgacgtgattgtgaccggcaacaatga |
9692622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 297 - 391
Target Start/End: Original strand, 9692620 - 9692714
Alignment:
| Q |
297 |
tgatcttggtatcttatcttatttcatagaaatggaatttaagataaaagcacaaggatttctagttcatcatggaaggtatgctcgagacatat |
391 |
Q |
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| T |
9692620 |
tgatcttggtatcttatcttatttcatagaaatggaatttaagataagagcacaaggatttctagttcatcatggaaggtatgctcgagacatat |
9692714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 29997244 - 29997360
Alignment:
| Q |
82 |
agacacctagagcatggaacaagaagatcgatgggttccttcttcaacaaggttttgtaaaatgtgtacatgtgcatatcttatactgcaaaaactcaac |
181 |
Q |
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| T |
29997244 |
agacagctagagcttggaacaagaaaatagatgggttccttcttcaacaaggatttgtgaaatgtgtaaatgagcataacatataccgcataaacactac |
29997343 |
T |
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| Q |
182 |
aaataagcacaaactaa |
198 |
Q |
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||||||| | ||||||| |
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| T |
29997344 |
aaataagaaaaaactaa |
29997360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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