View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13693_low_3 (Length: 413)

Name: NF13693_low_3
Description: NF13693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13693_low_3
NF13693_low_3
[»] chr7 (3 HSPs)
chr7 (225-395)||(9568704-9568874)
chr7 (16-136)||(9569014-9569135)
chr7 (31-108)||(36066327-36066404)
[»] chr8 (2 HSPs)
chr8 (56-119)||(43820403-43820466)
chr8 (31-103)||(6144755-6144827)
[»] chr3 (2 HSPs)
chr3 (56-119)||(1604518-1604581)
chr3 (33-119)||(10505722-10505807)
[»] chr1 (3 HSPs)
chr1 (231-285)||(11016243-11016298)
chr1 (56-119)||(11016467-11016530)
chr1 (231-285)||(36683470-36683525)
[»] chr4 (3 HSPs)
chr4 (231-285)||(42476961-42477016)
chr4 (31-104)||(26841764-26841837)
chr4 (231-263)||(6025414-6025446)
[»] chr6 (1 HSPs)
chr6 (231-275)||(21060155-21060200)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 225 - 395
Target Start/End: Complemental strand, 9568874 - 9568704
Alignment:
Q  225 ttagacaaatgaaatatcaatcatttgataagatccagagtatatttgttcataaagtaaattaagttttggtagattttatttttggacttgctacatg 324  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9568874 ttagacaaatgaaatatcaatcatttgataagatccagaatatatttgttcataaagtaaattaagttttggtaaattttatttttggacttgctacatg 9568775  T
Q  325 tggtgattttgtggccactagtggaggagaaaaccttcaacaccaagatacggttgctgtggtaataattg 395  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9568774 tggtaattttgtggccactagtggaggagaaaaccttcaacaccaagatacggttgctgtggtaataattg 9568704  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 9569135 - 9569014
Alignment:
Q  16 atctgaatatttttcgg-tgggctaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcgaaaaa 114  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9569135 atctaaatatttttcgggtgggccaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcaaaaaa 9569036  T
Q  115 ttaaatagcataattggaagaa 136  Q
    ||||||||||||||||||||||    
T  9569035 ttaaatagcataattggaagaa 9569014  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 36066327 - 36066404
Alignment:
Q  31 ggtgggctaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatc 108  Q
    ||||||| |||||||||||  ||  ||||||||||||||||| |||||||||  | |||||| |||||||||| ||||    
T  36066327 ggtgggccaccaaaataaactatgatatataaaacaaaatttgtgttgtagtgtgcattaaacataaagttgaaaatc 36066404  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 43820466 - 43820403
Alignment:
Q  56 tatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcgaaaaattaaa 119  Q
    |||||||||||||||||| ||||||||  | ||||||||||||||| | |||| ||||||||||    
T  43820466 tatataaaacaaaatttacgttgtagtgtgcattaaatataaagttaaaaatcaaaaaattaaa 43820403  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 6144827 - 6144755
Alignment:
Q  31 ggtgggctaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttga 103  Q
    ||||||| |||||||| ||  ||  ||||||||| |||||||||||||||||  || ||||||||||||||||    
T  6144827 ggtgggccaccaaaatgaactatgatatataaaataaaatttatgttgtagtgtgtgttaaatataaagttga 6144755  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 1604581 - 1604518
Alignment:
Q  56 tatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcgaaaaattaaa 119  Q
    |||||||||||||||| ||||||||||  | |||||| |||||||||| |||| ||||||||||    
T  1604581 tatataaaacaaaattcatgttgtagtgtgcattaaacataaagttgaaaatcaaaaaattaaa 1604518  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 10505722 - 10505807
Alignment:
Q  33 tgggctaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcgaaaaattaaa 119  Q
    |||||||||||||| ||  ||| |||| ||||||||||||||||| ||||  | |||||| |||||||||| |||  ||||||||||    
T  10505722 tgggctaccaaaatgaactataatataaaaaacaaaatttatgtt-tagtgtgcattaaacataaagttgaaaattaaaaaattaaa 10505807  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 11016298 - 11016243
Alignment:
Q  231 aaatgaaatatcaatcatttgataagatcc-agagtatatttgttcataaagtaaa 285  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||    
T  11016298 aaatgaaatatcaatcatttgatgagatccaaaagtatatttgttcttaaagtaaa 11016243  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 11016530 - 11016467
Alignment:
Q  56 tatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcgaaaaattaaa 119  Q
    ||||||||||||| |||||||||||||  | |||||| |||||||||| |||| ||||||||||    
T  11016530 tatataaaacaaattttatgttgtagtgtgcattaaacataaagttgaaaatcaaaaaattaaa 11016467  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 36683470 - 36683525
Alignment:
Q  231 aaatgaaatatcaatcatttgataagatcc-agagtatatttgttcataaagtaaa 285  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||    
T  36683470 aaatgaaatatcaatcatttgatgagatccaaaagtatatttgttcttaaagtaaa 36683525  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 42476961 - 42477016
Alignment:
Q  231 aaatgaaatatcaatcatttgataagatccaga-gtatatttgttcataaagtaaa 285  Q
    ||||||||||||||||||||||| ||||||| |  ||||||||||| |||||||||    
T  42476961 aaatgaaatatcaatcatttgatgagatccaaatatatatttgttcttaaagtaaa 42477016  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 26841764 - 26841837
Alignment:
Q  31 ggtgggctaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgag 104  Q
    ||||||| |||||| ||||  ||  |||||| ||||||||| ||||||| |||| ||||||| |||||||||||    
T  26841764 ggtgggccaccaaagtaaactatgatatatagaacaaaattaatgttgttgttaatattaaacataaagttgag 26841837  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 6025446 - 6025414
Alignment:
Q  231 aaatgaaatatcaatcatttgataagatccaga 263  Q
    ||||||||||||||||||||||| |||||||||    
T  6025446 aaatgaaatatcaatcatttgatgagatccaga 6025414  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 21060200 - 21060155
Alignment:
Q  231 aaatgaaatatcaatcatttgataagatcc-agagtatatttgttc 275  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||    
T  21060200 aaatgaaatatcaatcatttgatgagatccaaaagtatatttgttc 21060155  T

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