View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13693_low_4 (Length: 381)

Name: NF13693_low_4
Description: NF13693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13693_low_4
NF13693_low_4
[»] chr7 (30 HSPs)
chr7 (261-381)||(48071408-48071526)
chr7 (261-371)||(8802236-8802344)
chr7 (281-372)||(27391805-27391896)
chr7 (261-362)||(8802541-8802640)
chr7 (289-337)||(1085292-1085340)
chr7 (291-335)||(7517648-7517692)
chr7 (291-335)||(11845259-11845303)
chr7 (296-335)||(1085667-1085706)
chr7 (296-335)||(22566713-22566752)
chr7 (291-353)||(21416187-21416249)
chr7 (296-334)||(23569053-23569091)
chr7 (291-337)||(30253558-30253604)
chr7 (291-332)||(30244341-30244382)
chr7 (291-335)||(23423-23467)
chr7 (291-335)||(6054628-6054672)
chr7 (291-335)||(29157633-29157677)
chr7 (291-335)||(30245145-30245189)
chr7 (291-335)||(37533410-37533454)
chr7 (291-334)||(14681579-14681622)
chr7 (291-333)||(7554095-7554137)
chr7 (297-335)||(16569264-16569302)
chr7 (297-335)||(16596360-16596398)
chr7 (296-334)||(28300304-28300342)
chr7 (289-335)||(36939777-36939823)
chr7 (291-332)||(19122802-19122843)
chr7 (291-332)||(34218080-34218121)
chr7 (291-332)||(45754786-45754827)
chr7 (291-335)||(8128487-8128531)
chr7 (291-335)||(21619091-21619135)
chr7 (291-335)||(22567085-22567129)
[»] chr6 (24 HSPs)
chr6 (288-381)||(21130100-21130193)
chr6 (261-381)||(22605273-22605391)
chr6 (261-381)||(22605038-22605156)
chr6 (291-335)||(1846816-1846860)
chr6 (291-335)||(2377822-2377866)
chr6 (296-335)||(16454643-16454682)
chr6 (291-333)||(3058296-3058338)
chr6 (289-335)||(35210272-35210318)
chr6 (291-380)||(11637767-11637856)
chr6 (291-332)||(16107749-16107790)
chr6 (291-335)||(2578489-2578533)
chr6 (291-335)||(3409327-3409371)
chr6 (291-335)||(3415526-3415570)
chr6 (291-335)||(10074037-10074081)
chr6 (291-335)||(10074409-10074453)
chr6 (291-335)||(29518571-29518615)
chr6 (291-335)||(29518988-29519032)
chr6 (296-332)||(32460631-32460667)
chr6 (291-335)||(32741247-32741291)
chr6 (296-335)||(16454975-16455014)
chr6 (296-334)||(2843624-2843662)
chr6 (296-333)||(6071202-6071239)
chr6 (296-333)||(6999847-6999884)
chr6 (296-332)||(1127431-1127467)
[»] chr5 (30 HSPs)
chr5 (171-265)||(14169139-14169230)
chr5 (171-265)||(14169324-14169415)
chr5 (261-381)||(41340301-41340419)
chr5 (281-381)||(5963705-5963805)
chr5 (300-381)||(14168956-14169037)
chr5 (281-375)||(41341483-41341577)
chr5 (288-381)||(34103576-34103669)
chr5 (291-381)||(13042561-13042651)
chr5 (291-381)||(13112559-13112649)
chr5 (289-335)||(41170702-41170748)
chr5 (291-335)||(6500890-6500934)
chr5 (291-335)||(26074680-26074724)
chr5 (296-335)||(18603171-18603210)
chr5 (296-335)||(32487461-32487500)
chr5 (291-335)||(9498700-9498744)
chr5 (291-335)||(26074192-26074236)
chr5 (291-335)||(40296361-40296405)
chr5 (291-330)||(6500523-6500562)
chr5 (296-335)||(29549306-29549345)
chr5 (296-335)||(34753076-34753115)
chr5 (296-335)||(36521947-36521986)
chr5 (291-333)||(33747841-33747883)
chr5 (296-333)||(11417028-11417065)
chr5 (296-337)||(24489257-24489298)
chr5 (306-335)||(26075223-26075252)
chr5 (296-333)||(36527146-36527183)
chr5 (291-335)||(624264-624308)
chr5 (293-337)||(2411073-2411117)
chr5 (291-335)||(3295061-3295105)
chr5 (291-335)||(25328003-25328047)
[»] chr3 (37 HSPs)
chr3 (290-381)||(17731949-17732040)
chr3 (290-381)||(19033180-19033271)
chr3 (291-381)||(54017594-54017684)
chr3 (281-381)||(16870995-16871095)
chr3 (281-375)||(17735027-17735121)
chr3 (281-375)||(19036296-19036390)
chr3 (291-335)||(22304001-22304045)
chr3 (306-381)||(43978636-43978711)
chr3 (289-335)||(22303703-22303749)
chr3 (291-334)||(3135500-3135543)
chr3 (296-335)||(52634743-52634782)
chr3 (297-335)||(32589771-32589809)
chr3 (291-337)||(43346837-43346883)
chr3 (281-338)||(16868419-16868476)
chr3 (296-337)||(29644632-29644673)
chr3 (308-381)||(43755590-43755663)
chr3 (291-352)||(48127861-48127922)
chr3 (291-335)||(12114608-12114652)
chr3 (291-335)||(15772922-15772966)
chr3 (291-335)||(22304637-22304681)
chr3 (291-335)||(39389138-39389182)
chr3 (281-340)||(16869833-16869892)
chr3 (296-335)||(29644953-29644992)
chr3 (300-335)||(41359820-41359855)
chr3 (296-335)||(47964569-47964608)
chr3 (297-335)||(1634366-1634404)
chr3 (291-329)||(53118021-53118059)
chr3 (291-353)||(53596010-53596072)
chr3 (291-353)||(53596325-53596387)
chr3 (290-335)||(16143506-16143551)
chr3 (296-333)||(32462609-32462646)
chr3 (291-332)||(32462946-32462987)
chr3 (291-332)||(37990685-37990726)
chr3 (296-333)||(46546376-46546413)
chr3 (291-335)||(4823723-4823767)
chr3 (291-335)||(35946590-35946634)
chr3 (296-332)||(42342141-42342177)
[»] chr4 (28 HSPs)
chr4 (296-381)||(1868073-1868158)
chr4 (291-381)||(11197248-11197338)
chr4 (296-375)||(10396444-10396523)
chr4 (296-335)||(22183313-22183352)
chr4 (291-335)||(41370425-41370469)
chr4 (291-335)||(49302974-49303018)
chr4 (291-335)||(50630799-50630843)
chr4 (291-335)||(54936264-54936308)
chr4 (289-335)||(1731689-1731735)
chr4 (291-333)||(25483406-25483448)
chr4 (296-334)||(44620422-44620460)
chr4 (296-337)||(3271853-3271894)
chr4 (291-335)||(3340875-3340919)
chr4 (296-332)||(4955366-4955402)
chr4 (291-335)||(18932793-18932837)
chr4 (291-335)||(36629305-36629349)
chr4 (291-335)||(55933168-55933212)
chr4 (296-335)||(31691220-31691259)
chr4 (288-351)||(51681590-51681653)
chr4 (296-335)||(54017644-54017683)
chr4 (291-332)||(23817725-23817766)
chr4 (291-332)||(34646693-34646734)
chr4 (291-335)||(922486-922530)
chr4 (296-332)||(15841417-15841453)
chr4 (296-332)||(32941172-32941208)
chr4 (299-335)||(49880228-49880264)
chr4 (291-335)||(50002494-50002538)
chr4 (291-335)||(54108981-54109024)
[»] chr8 (23 HSPs)
chr8 (281-381)||(12156694-12156794)
chr8 (296-335)||(3038341-3038380)
chr8 (306-381)||(5981795-5981869)
chr8 (291-334)||(30441154-30441197)
chr8 (291-336)||(147887-147932)
chr8 (291-335)||(5915935-5915979)
chr8 (291-335)||(9483233-9483277)
chr8 (291-335)||(20870619-20870663)
chr8 (291-335)||(30359339-30359383)
chr8 (296-331)||(32640583-32640618)
chr8 (296-335)||(40518139-40518178)
chr8 (291-337)||(6651560-6651606)
chr8 (291-332)||(3669758-3669799)
chr8 (291-332)||(34834947-34834988)
chr8 (291-335)||(3670128-3670172)
chr8 (296-332)||(9507853-9507889)
chr8 (291-335)||(18371707-18371750)
chr8 (289-333)||(18372038-18372082)
chr8 (296-336)||(18829893-18829933)
chr8 (291-335)||(33113413-33113457)
chr8 (291-335)||(34835277-34835321)
chr8 (291-335)||(34835543-34835587)
chr8 (291-335)||(34835809-34835853)
[»] scaffold0014 (1 HSPs)
scaffold0014 (281-378)||(197754-197849)
[»] chr2 (24 HSPs)
chr2 (296-335)||(29874074-29874113)
chr2 (296-340)||(36178222-36178266)
chr2 (291-335)||(36178651-36178695)
chr2 (289-337)||(37895105-37895153)
chr2 (296-335)||(14745345-14745384)
chr2 (296-335)||(14745718-14745757)
chr2 (296-335)||(15880331-15880370)
chr2 (291-381)||(28226359-28226449)
chr2 (289-335)||(37106256-37106302)
chr2 (291-335)||(6421799-6421843)
chr2 (291-335)||(28254283-28254327)
chr2 (297-333)||(35580776-35580812)
chr2 (296-335)||(962666-962705)
chr2 (296-335)||(31468801-31468840)
chr2 (306-335)||(31385805-31385834)
chr2 (291-340)||(37105987-37106036)
chr2 (296-337)||(40679680-40679721)
chr2 (291-331)||(3672773-3672813)
chr2 (291-335)||(5542671-5542715)
chr2 (291-335)||(6422178-6422222)
chr2 (291-335)||(15511541-15511585)
chr2 (299-335)||(35580494-35580530)
chr2 (296-332)||(36178320-36178356)
chr2 (291-335)||(36784306-36784350)
[»] scaffold0702 (1 HSPs)
scaffold0702 (291-335)||(560-604)
[»] scaffold0078 (1 HSPs)
scaffold0078 (291-335)||(5425-5469)
[»] chr1 (26 HSPs)
chr1 (291-335)||(17294645-17294689)
chr1 (291-333)||(45494020-45494062)
chr1 (304-381)||(4392251-4392328)
chr1 (291-332)||(29798270-29798311)
chr1 (298-335)||(44290511-44290548)
chr1 (291-335)||(5320011-5320055)
chr1 (291-335)||(26661568-26661612)
chr1 (291-335)||(26661944-26661988)
chr1 (291-335)||(34364993-34365037)
chr1 (296-335)||(22077161-22077200)
chr1 (296-335)||(32168749-32168788)
chr1 (291-333)||(37556181-37556223)
chr1 (291-333)||(38804401-38804443)
chr1 (291-333)||(41759553-41759595)
chr1 (291-332)||(3550791-3550832)
chr1 (306-335)||(44290886-44290915)
chr1 (291-335)||(14318935-14318979)
chr1 (296-332)||(19283506-19283542)
chr1 (281-381)||(27686560-27686660)
chr1 (297-337)||(30630690-30630730)
chr1 (291-335)||(32594762-32594806)
chr1 (297-337)||(34649504-34649544)
chr1 (291-335)||(39066246-39066290)
chr1 (291-335)||(41157059-41157103)
chr1 (291-335)||(41157443-41157487)
chr1 (291-335)||(44043818-44043862)
[»] scaffold0391 (2 HSPs)
scaffold0391 (291-335)||(1737-1781)
scaffold0391 (298-332)||(1159-1193)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 261 - 381
Target Start/End: Complemental strand, 48071526 - 48071408
Alignment:
Q  261 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgttt 360  Q
    |||| ||||||||||||||||||  | ||||||  ||||||||||||||||||||||| |||| |||||||| ||||||| | |||||||||||||||||    
T  48071526 caaacgtccaagatcataagaga--cttaaacatcacactcttatccaaaaccttaagacaataggtttatgagttccctctcttatatatcctttgttt 48071429  T
Q  361 cctccattcctagtcgatgtg 381  Q
    |||||||||||||||||||||    
T  48071428 cctccattcctagtcgatgtg 48071408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 8802344 - 8802236
Alignment:
Q  261 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgttt 360  Q
    |||| |||||||| |||||||||  | ||||||| || ||||||  |||||| | ||| ||||| ||||||||||||||| | |||||||||||||||||    
T  8802344 caaacgtccaagaccataagaga--cttaaacaccacgctcttactcaaaacataaagacaatgagtttatgggttccctctcttatatatcctttgttt 8802247  T
Q  361 cctccattcct 371  Q
    |||||||||||    
T  8802246 cctccattcct 8802236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 27391805 - 27391896
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattccta 372  Q
    |||||| ||||||| ||||||||| | |||||||||||||| ||| |||||||||| | | | |||||||||||||| ||||||||||||||    
T  27391805 agagacttaaacaccacactcttacctaaaaccttaaggcagtggatttatgggtttcatgtcttatatatcctttgcttcctccattccta 27391896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 362
Target Start/End: Complemental strand, 8802640 - 8802541
Alignment:
Q  261 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgttt 360  Q
    |||||||||| || |||||||||  | ||||||| ||||||||| |||||| |||||  || || ||||||||||||||  | |||||||||||||||||    
T  8802640 caaatgtccatgaccataagaga--cttaaacaccacactcttacccaaaatcttaaaacagtgagtttatgggttccccctcttatatatcctttgttt 8802543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 1085292 - 1085340
Alignment:
Q  289 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  1085292 aaacaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 1085340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 7517692 - 7517648
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  7517692 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 7517648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 11845303 - 11845259
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  11845303 acaccacactcttatccaaaaccttaaggcaatggatttatgggt 11845259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 1085667 - 1085706
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  1085667 acactcttacccaaaaccttaaggcaatgggtttatgggt 1085706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 22566713 - 22566752
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  22566713 acactcttacccaaaaccttaaggcaatgggtttatgggt 22566752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 21416187 - 21416249
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 353  Q
    |||| ||||||||| |||||||| |||||||||||||||||||||  ||| | ||||||||||    
T  21416187 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatcc 21416249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 23569053 - 23569091
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatggg 334  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  23569053 acactcttacccaaaaccttaaggcaatgggtttatggg 23569091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 30253604 - 30253558
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  30253604 acaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 30253558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 30244382 - 30244341
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  30244382 acaccacactcttacccaaaaccttaaggcaatgggtttatg 30244341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 23423 - 23467
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||    
T  23423 acaccacactcttacccaaaaccttaaggcaataggtttatgggt 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 6054672 - 6054628
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  6054672 acaccacactcttacccaaaaccttaaggcaatgtgtttatgggt 6054628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 29157677 - 29157633
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||    
T  29157677 acaccacactcttacccaaaaccttaaggcaatggatttatgggt 29157633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 30245189 - 30245145
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  30245189 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 30245145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 37533410 - 37533454
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||    
T  37533410 acaccacactcttacccaaaaccttaaggcaatggatttatgggt 37533454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 334
Target Start/End: Complemental strand, 14681622 - 14681579
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatggg 334  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||    
T  14681622 acaccacactcttacccaaaaccttaagacaatgggtttatggg 14681579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 7554137 - 7554095
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||    
T  7554137 acaccacactcttacccaaaaccttaaggctatgggtttatgg 7554095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 16569302 - 16569264
Alignment:
Q  297 cactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  16569302 cactcttaccaaaaaccttaaggcaatgggtttatgggt 16569264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 16596360 - 16596398
Alignment:
Q  297 cactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  16596360 cactcttaccaaaaaccttaaggcaatgggtttatgggt 16596398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 28300304 - 28300342
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatggg 334  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  28300304 acactcttacccaaaatcttaaggcaatgggtttatggg 28300342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 36939777 - 36939823
Alignment:
Q  289 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||| ||||| ||| |||||||||||||||||||| |||||||||    
T  36939777 aaacaccacacttttacccaaaaccttaaggcaatggatttatgggt 36939823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 19122843 - 19122802
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  19122843 acaccacactcttacccaaaaccttaaggcaatggatttatg 19122802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 34218080 - 34218121
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| ||||||||||||| |||||||||||||    
T  34218080 acaccacactcttacccaaaaccttaagacaatgggtttatg 34218121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 45754827 - 45754786
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| ||||||||||||||| |||||||||||    
T  45754827 acaccacactcttacccaaaaccttaaggctatgggtttatg 45754786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 8128487 - 8128531
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||  ||||||||||||||    
T  8128487 acaccacactcttaaccaaaaccttaaggttatgggtttatgggt 8128531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 21619091 - 21619135
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||| ||| ||||||||||||| ||||||||||||||||    
T  21619091 acaccacacttttacccaaaaccttaagacaatgggtttatgggt 21619135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 22567085 - 22567129
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| | ||||||||||||||||| ||||||||||    
T  22567085 acaccacactcttaccaaaaaccttaaggcaatgagtttatgggt 22567129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 288 - 381
Target Start/End: Original strand, 21130100 - 21130193
Alignment:
Q  288 taaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||||||||    
T  21130100 taaacaccacactcttatccaaaaccttaaggcaatggatttatgggttccctctcttatatatcttttgtttcctccattcctagtcgatgtg 21130193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 261 - 381
Target Start/End: Original strand, 22605273 - 22605391
Alignment:
Q  261 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgttt 360  Q
    |||| |||||||| |||||||||  | ||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||  | |||||||||||||||||    
T  22605273 caaacgtccaagaccataagaga--cttaaacaccacattcttacccaaaaccttaaggcaatgggtttatgggtttccactcttatatatcctttgttt 22605370  T
Q  361 cctccattcctagtcgatgtg 381  Q
    |||||||||||||||||||||    
T  22605371 cctccattcctagtcgatgtg 22605391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 261 - 381
Target Start/End: Original strand, 22605038 - 22605156
Alignment:
Q  261 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgttt 360  Q
    ||||||||||||| ||||||||||   |||||||  ||||||||||||||| ||||||  ||||||||||||| |||||| | |||||||||||||||||    
T  22605038 caaatgtccaagaccataagagagt--taaacacctcactcttatccaaaagcttaagaaaatgggtttatggattccctctcttatatatcctttgttt 22605135  T
Q  361 cctccattcctagtcgatgtg 381  Q
    ||||| |||||||||||||||    
T  22605136 cctccgttcctagtcgatgtg 22605156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 1846860 - 1846816
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  1846860 acaccacactcttatccaaaaccttaaggcaatggatttatgggt 1846816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 2377866 - 2377822
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  2377866 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 2377822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 16454682 - 16454643
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  16454682 acactcttatccaaaatcttaaggcaatgggtttatgggt 16454643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 3058338 - 3058296
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  3058338 acaccacactcttacccaaaaccttaaggcaatgggtttatgg 3058296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 35210318 - 35210272
Alignment:
Q  289 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||    
T  35210318 aaacaccacactcttacccaaaaccttaaggcaatggttttatgggt 35210272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 11637767 - 11637856
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgt 380  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||  ||| | |||||||| |  ||||| || || | |||||||||||    
T  11637767 acaccacactcttatccaaaatcttaagacaatgggtttatgggtatcctctcttatatattcaatgtttgcttcacttctagtcgatgt 11637856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 16107790 - 16107749
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  16107790 acaccacactcttacccaaaaccttaaggcaatgggtttatg 16107749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 2578489 - 2578533
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  2578489 acaccacactcttacccaaaaccttaaggctatgggtttatgggt 2578533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 3409371 - 3409327
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  3409371 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 3409327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 3415570 - 3415526
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  3415570 acaccacactcttaccaaaaaccttaaggcaatgggtttatgggt 3415526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 10074037 - 10074081
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||    
T  10074037 acaccacacttttacccaaaaccttaaggcaatgggtttatgggt 10074081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 10074409 - 10074453
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  10074409 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 10074453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 29518615 - 29518571
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||    
T  29518615 acaccacactcttacccaaaaccttaaggtaatgggtttatgggt 29518571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 29519032 - 29518988
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||    
T  29519032 acaccacactcttacccaaaaccttaaggtaatgggtttatgggt 29518988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 32460631 - 32460667
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    ||||||||| |||||||||||||||||||||||||||    
T  32460631 acactcttacccaaaaccttaaggcaatgggtttatg 32460667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 32741291 - 32741247
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||    
T  32741291 acaccacactcttacccaaaaccttaaggtaatgggtttatgggt 32741247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 16455014 - 16454975
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  16455014 acactcttacccaaaaccttaaggcaataggtttatgggt 16454975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 2843662 - 2843624
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatggg 334  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  2843662 acactcttacccaaaaccttaaggcaatgagtttatggg 2843624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 6071239 - 6071202
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  6071239 acactcttatccaaaatcttaaggcaatgagtttatgg 6071202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 6999847 - 6999884
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||||||||||||||||||||||||| || ||||||||    
T  6999847 acactcttatccaaaaccttaaggcagtgagtttatgg 6999884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 1127467 - 1127431
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  1127467 acactcttacccaaaaccttaaggtaatgggtttatg 1127431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 14169230 - 14169139
Alignment:
Q  171 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaatatacacaacaattgaaagcatgcattttaacaaat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||||||||||||||    
T  14169230 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaaaatac---acaatggaaagcatgcattttaacaaat 14169139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 14169415 - 14169324
Alignment:
Q  171 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaatatacacaacaattgaaagcatgcattttaacaaat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||||||||||||||    
T  14169415 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaaaatac---acaatggaaagcatgcattttaacaaat 14169324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 261 - 381
Target Start/End: Complemental strand, 41340419 - 41340301
Alignment:
Q  261 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgttt 360  Q
    |||| |||||||| |||||||||  | ||||||| |||||||||||||||| |||||||||||| || |||| ||||||| | ||||||||| ||||| |    
T  41340419 caaacgtccaagaccataagaga--cttaaacaccacactcttatccaaaatcttaaggcaatgagtgtatgagttccctctcttatatatcttttgtct 41340322  T
Q  361 cctccattcctagtcgatgtg 381  Q
    |||||||||||||||||||||    
T  41340321 cctccattcctagtcgatgtg 41340301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 281 - 381
Target Start/End: Complemental strand, 5963805 - 5963705
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgt 380  Q
    |||||| ||||||| ||||||||| ||||||||||||||||   | | |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  5963805 agagacttaaacaccacactcttacccaaaaccttaaggcatcagatctatgggttccctctcttatatatcctttgtttcctccattcctagtcgatgt 5963706  T
Q  381 g 381  Q
    |    
T  5963705 g 5963705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 14169037 - 14168956
Alignment:
Q  300 tcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    ||||| ||||||| ||||||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  14169037 tcttacccaaaactttaaggcaatgagcttatgggttccctctcttatatatcctttgtttcctccattcctagtcgatgtg 14168956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 41341577 - 41341483
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtc 375  Q
    |||||| ||||||| ||| ||||| | ||||||||||||||||| || |||||||||||| | ||||||||||||||| ||||||||||||||||    
T  41341577 agagacttaaacaccacattcttaccaaaaaccttaaggcaatgagtgtatgggttccctctcttatatatcctttgtctcctccattcctagtc 41341483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 288 - 381
Target Start/End: Complemental strand, 34103669 - 34103576
Alignment:
Q  288 taaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||| |||| || | ||||||||||||| ||||||||||| ||| ||||||||    
T  34103669 taaacaccacactcttattcaaaaccttaaggcaatgagtttatgagttctctctcttatatatcctttatttcctccatttctattcgatgtg 34103576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 13042651 - 13042561
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  ||| | |||||||||   ||||| ||| ||| ||||||||||||    
T  13042651 acaccacactcttatccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtg 13042561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 13112649 - 13112559
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||  ||| | |||||||||   ||||| ||| ||| ||||||||||||    
T  13112649 acaccacactcttatccaaaaccttaagacaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtg 13112559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 41170748 - 41170702
Alignment:
Q  289 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  41170748 aaacaccacactcttacccaaaaccttaaggcaatgggtttatgggt 41170702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 6500934 - 6500890
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||    
T  6500934 acaccacactcttatccaaaaccttaaggcaatgagtttatgggt 6500890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 26074724 - 26074680
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  26074724 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 26074680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 18603171 - 18603210
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18603171 acactcttacccaaaaccttaaggcaatgggtttatgggt 18603210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 32487500 - 32487461
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32487500 acactcttacccaaaaccttaaggcaatgggtttatgggt 32487461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 9498700 - 9498744
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||    
T  9498700 acaccacactcttacccaaaatcttaaggcaatgggtttatgggt 9498744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 26074192 - 26074236
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  26074192 acaccacactcttacccaaaaccttaaggcaatgggttcatgggt 26074236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 40296361 - 40296405
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||||    
T  40296361 acaccacactcttacccaaaacctcaaggcaatgggtttatgggt 40296405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 6500562 - 6500523
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggttta 330  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  6500562 acaccacactcttacccaaaaccttaaggcaatgggttta 6500523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 29549306 - 29549345
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  29549306 acactcttatccaaaaccttaaggtaatgtgtttatgggt 29549345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 34753076 - 34753115
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  34753076 acactcttacccaaaaccttaaggcaatcggtttatgggt 34753115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 36521947 - 36521986
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  36521947 acactcttacccaaaaccttaaggcaattggtttatgggt 36521986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 33747883 - 33747841
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||| |||||||||||||||| |||||||||||| ||||||||    
T  33747883 acaccacactcttatccaaaatcttaaggcaatgagtttatgg 33747841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 11417028 - 11417065
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||||||||  |||||||||||||||||||||||||||    
T  11417028 acactcttacacaaaaccttaaggcaatgggtttatgg 11417065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 24489257 - 24489298
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    |||||||||  ||||| |||||||||||||||||||||||||    
T  24489257 acactcttacgcaaaatcttaaggcaatgggtttatgggttc 24489298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 26075223 - 26075252
Alignment:
Q  306 ccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||||||||||||||||||||||||    
T  26075223 ccaaaaccttaaggcaatgggtttatgggt 26075252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 36527146 - 36527183
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  36527146 acactcttatccaaaatcttaaggcaatgcgtttatgg 36527183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 624308 - 624264
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  624308 acaccacactcttacccaaaacctcaaggctatgggtttatgggt 624264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 2411117 - 2411073
Alignment:
Q  293 actacactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    ||||||||||||  |||||||||||||||||  ||||||||||||    
T  2411117 actacactcttactcaaaaccttaaggcaataagtttatgggttc 2411073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 3295061 - 3295105
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| |||||| || ||||||||| ||||||||||||||||||||    
T  3295061 acaccacactcatacccaaaacctcaaggcaatgggtttatgggt 3295105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 25328047 - 25328003
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||||| | |||||||||||    
T  25328047 acaccacactcttacccaaaaccttaaggcattaggtttatgggt 25328003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 17731949 - 17732040
Alignment:
Q  290 aacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  17731949 aacaccacactcttactcaaaaccttaaggcaatgggtttatgggttccctttcttatatatcctttgtttcctccattcctagtcgatgtg 17732040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 19033180 - 19033271
Alignment:
Q  290 aacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  19033180 aacaccacactcttactcaaaaccttaaggcaatgggtttatgggttccctttcttatatatcctttgtttcctccattcctagtcgatgtg 19033271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 54017594 - 54017684
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    |||| ||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |||||||||||||||||||    
T  54017594 acaccacactcttacccaaaaccttaaggcaatgggtttatggattccctctcttatatatcctttgtttcttccattcctagtcgatgtg 54017684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 16870995 - 16871095
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgt 380  Q
    |||||| ||||||| ||||||||| | ||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||| | |||||||    
T  16870995 agagacttaaacacgacactcttacctaaaaccttaaggcaatgagtttatgggttccctctcttatatattctttgtttcctccattccaaatcgatgt 16871094  T
Q  381 g 381  Q
    |    
T  16871095 g 16871095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 375
Target Start/End: Original strand, 17735027 - 17735121
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtc 375  Q
    |||||| |||||||  |||||||| ||||||||||||| ||||| ||||||||||||||| | ||||||||| |||| |||||||||||||||||    
T  17735027 agagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttggttcctccattcctagtc 17735121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 375
Target Start/End: Original strand, 19036296 - 19036390
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtc 375  Q
    |||||| |||||||  |||||||| ||||||||||||| ||||| ||||||||||||||| | ||||||||| |||| |||||||||||||||||    
T  19036296 agagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttggttcctccattcctagtc 19036390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 22304001 - 22304045
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  22304001 acaccacactcttatccaaaaccttaaggcaatgggtttatgggt 22304045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 43978636 - 43978711
Alignment:
Q  306 ccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    |||||||||||||||||| ||| |||| ||  ||| | ||||||||||  ||||||||||||||||||||||||||    
T  43978636 ccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaatgtttcctccattcctagtcgatgtg 43978711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 22303703 - 22303749
Alignment:
Q  289 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  22303703 aaacaccacactcttacccaaaaccttaaggcaatgggtttatgggt 22303749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 3135500 - 3135543
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatggg 334  Q
    |||| ||||||||||| |||||||||||||||||||||||||||    
T  3135500 acaccacactcttatctaaaaccttaaggcaatgggtttatggg 3135543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 52634782 - 52634743
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  52634782 acactcttacccaaaaccttaaggcaatgggtttatgggt 52634743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 32589809 - 32589771
Alignment:
Q  297 cactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  32589809 cactcttacccaaaaccttaaggcaatgggtttatgggt 32589771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 43346837 - 43346883
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  43346837 acaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 43346883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 16868419 - 16868476
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttcc 338  Q
    |||||| ||||||  |||||||||||||||| |||||||||||| |||||||| ||||    
T  16868419 agagacttaaacatcacactcttatccaaaatcttaaggcaatgagtttatggattcc 16868476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 29644632 - 29644673
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  29644632 acactcttacccaaaaccttaagacaatgggtttatgggttc 29644673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 43755663 - 43755590
Alignment:
Q  308 aaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    |||||||||||| ||| ||| ||||| |||||||| |||||||||| | ||||| ||||||| || ||||||||    
T  43755663 aaaaccttaaggtaataggtatatggattccctatcttatatatccatcgtttcatccattcataatcgatgtg 43755590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 48127861 - 48127922
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatc 352  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||  ||| | |||||||||    
T  48127861 acaccacactcttatccaaaacattaaagcaatgggtttatgggtctcctctcttatatatc 48127922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 12114608 - 12114652
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  12114608 acaccacactcttacccaaaaccttaagacaatgggtttatgggt 12114652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 15772966 - 15772922
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| |||||||||||||||||||||| |||||| ||||||||||    
T  15772966 acaccacactcttatccaaaaccttaaagcaatgagtttatgggt 15772922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 22304681 - 22304637
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  22304681 acaccacactcttacccaaaaccttaaggcaatgtgtttatgggt 22304637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 39389182 - 39389138
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  39389182 acaccacactcttacccaaaaccttaagacaatgggtttatgggt 39389138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 16869833 - 16869892
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccct 340  Q
    |||||| ||||||| ||||||||   |||||||||||||||||| ||||||| |||||||    
T  16869833 agagacttaaacaccacactcttgctcaaaaccttaaggcaatgagtttatgtgttccct 16869892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 29644953 - 29644992
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  29644953 acactcttacccaaaaccttaagacaatgggtttatgggt 29644992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 41359820 - 41359855
Alignment:
Q  300 tcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41359820 tcttacccaaaaccttaaggcaatgggtttatgggt 41359855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 47964569 - 47964608
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  47964569 acactcttacccaaaaccttaaggcaataggtttatgggt 47964608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 1634366 - 1634404
Alignment:
Q  297 cactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  1634366 cactcttacccaaaaccttaagccaatgggtttatgggt 1634404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 53118021 - 53118059
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggttt 329  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  53118021 acactacactcttacccaaaatcttaaggcaatgggttt 53118059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 53596072 - 53596010
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 353  Q
    |||| ||||||||| |||||||||||||| || ||||||||||||  ||| | ||||||||||    
T  53596072 acaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatcc 53596010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 53596387 - 53596325
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcc 353  Q
    |||| ||||||||| |||||||||||||| || ||||||||||||  ||| | ||||||||||    
T  53596387 acaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatcc 53596325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 16143551 - 16143506
Alignment:
Q  290 aacactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||||||||| ||||||| ||||||||||| | ||||||||    
T  16143551 aacactacactcttacccaaaactttaaggcaatgagcttatgggt 16143506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 32462609 - 32462646
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  32462609 acactcttatccaaaaccttaaagcaataggtttatgg 32462646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 32462946 - 32462987
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| |||||||||  ||||||||||||||||||||||||||    
T  32462946 acaccacactcttactcaaaaccttaaggcaatgggtttatg 32462987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 37990685 - 37990726
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  37990685 acaccacactcttacccaaaaccttaaggcaatgagtttatg 37990726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 46546376 - 46546413
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||||||||  |||||||||||||||||||||||||||    
T  46546376 acactcttacacaaaaccttaaggcaatgggtttatgg 46546413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 4823767 - 4823723
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||| |||||||||||| ||||||||||    
T  4823767 acaccacactcttacccaaaatcttaaggcaatgagtttatgggt 4823723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 35946634 - 35946590
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  35946634 acaccacacttttacccaaaaccttaaggcaacgggtttatgggt 35946590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 42342141 - 42342177
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  42342141 acactcttacccaaaaccttaaggcaatgagtttatg 42342177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 381
Target Start/End: Complemental strand, 1868158 - 1868073
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||| |||||||||||    
T  1868158 acactcttacccaaaactttaaggcaatgggtttatgggttccctctcttatatatcatttatttcctccattcttagtcgatgtg 1868073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 11197338 - 11197248
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    |||| ||||||||| |||||||| |||||||||||||||||||||  ||| | ||||||||||   |||||||||||| ||||||||||||    
T  11197338 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtg 11197248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 10396523 - 10396444
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtc 375  Q
    |||||||||||||||||| |||||||||||||||||||||  ||| | ||||||||||    ||||||||||| ||||||    
T  10396523 acactcttatccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacatttcctccatttctagtc 10396444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 22183313 - 22183352
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22183313 acactcttatccaaaaccttaaggcaatgggtttatgggt 22183352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 41370469 - 41370425
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  41370469 acactacactcttacccaaaactttaaggcaatgggtttatgggt 41370425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 49303018 - 49302974
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  49303018 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 49302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 50630799 - 50630843
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  50630799 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 50630843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 54936308 - 54936264
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  54936308 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 54936264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 1731689 - 1731735
Alignment:
Q  289 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||    
T  1731689 aaacaccacactcttacccaaaaccttaaggcaattggtttatgggt 1731735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 25483448 - 25483406
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  25483448 acaccacactcttacccaaaaccttaaggcaatgggtttatgg 25483406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 44620460 - 44620422
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatggg 334  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  44620460 acactcttacccaaaaccttaaggcaatgggtttatggg 44620422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 3271894 - 3271853
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  3271894 acactcttacccaaaaccttaaggcaataggtttatgggttc 3271853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 3340919 - 3340875
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||    
T  3340919 acaccacactcttacccaaaaccttaaggcagtgggtttatgggt 3340875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 4955366 - 4955402
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4955366 acactcttacccaaaaccttaaggcaatgggtttatg 4955402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 18932793 - 18932837
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  18932793 acaccacactcttacctaaaaccttaaggcaatgggtttatgggt 18932837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 36629349 - 36629305
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  36629349 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 36629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 55933168 - 55933212
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||    
T  55933168 acaccacactcttacccaaaactttaaggcaatgggtttatgggt 55933212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 31691259 - 31691220
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  31691259 acactcttacccaaaaccttaaggcaatgagtttatgggt 31691220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 51681653 - 51681590
Alignment:
Q  288 taaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatat 351  Q
    ||||||| ||||||||| |||||| ||||||||||||||| |||| || |||| | ||||||||    
T  51681653 taaacaccacactcttacccaaaatcttaaggcaatgggtatatgagtcccctctcttatatat 51681590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 54017644 - 54017683
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  54017644 acactcttacctaaaaccttaaggcaatgggtttatgggt 54017683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 23817725 - 23817766
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  23817725 acaccacactcttacccaaaaccttaaggcaatgagtttatg 23817766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 34646693 - 34646734
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  34646693 acaccacactcttacccaaaaccttaaggcaatgagtttatg 34646734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 922530 - 922486
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||||||||| || |||| ||||||||||||||||    
T  922530 acaccacactcttatccaaacccctaagacaatgggtttatgggt 922486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 15841417 - 15841453
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  15841417 acactcttacccaaaaccttaaggcaatgtgtttatg 15841453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 32941172 - 32941208
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  32941172 acactcttacccaaaaccttaaggcaatgagtttatg 32941208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 49880264 - 49880228
Alignment:
Q  299 ctcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||| |||||||||||||||| |||||||||||||    
T  49880264 ctcttacccaaaaccttaaggcagtgggtttatgggt 49880228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 50002538 - 50002494
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||| |||||| |||||||||    
T  50002538 acaccacactcttacccaaaaccttaagacaatggatttatgggt 50002494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 54109024 - 54108981
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||    
T  54109024 acaccacactcttacccaaaac-ttaaggcaatgggtttatgggt 54108981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 12156694 - 12156794
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgt 380  Q
    |||||| ||||||  ||||||||| ||||||||||||| ||||||||||||| ||||  | | ||||||||| ||||||||||||||||||| |||||||    
T  12156694 agagacttaaacatcacactcttacccaaaaccttaagacaatgggtttatgagttctttctcttatatatcttttgtttcctccattcctaatcgatgt 12156793  T
Q  381 g 381  Q
    |    
T  12156794 g 12156794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 3038341 - 3038380
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  3038341 acactcttacccaaaaccttaaggcaatgggtttatgggt 3038380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 5981795 - 5981869
Alignment:
Q  306 ccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    |||||||||||||||||||| ||||||||| |||| | ||||||||||   |||||||||||||||| | ||||||    
T  5981795 ccaaaaccttaaggcaatgg-tttatgggtcccctctcttatatatccaacgtttcctccattcctaattgatgtg 5981869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 334
Target Start/End: Complemental strand, 30441197 - 30441154
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatggg 334  Q
    |||| ||||||||| |||||||||||||||||||||||||||||    
T  30441197 acaccacactcttacccaaaaccttaaggcaatgggtttatggg 30441154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 147932 - 147887
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggtt 336  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||    
T  147932 acaccacactcttacccaaaaccttaaggcaataggtttatgggtt 147887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 5915979 - 5915935
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  5915979 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 5915935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 9483233 - 9483277
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  9483233 acaccacactcttacccaaaaccttaagacaatgggtttatgggt 9483277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 20870619 - 20870663
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||    
T  20870619 acaccacactcttatccaaaatcttaaggcagtgggtttatgggt 20870663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 30359383 - 30359339
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  30359383 acaccacactcttacccaaaaccttaaggctatgggtttatgggt 30359339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 32640583 - 32640618
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttat 331  Q
    ||||||||| ||||||||||||||||||||||||||    
T  32640583 acactcttacccaaaaccttaaggcaatgggtttat 32640618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 40518178 - 40518139
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  40518178 acactcttacccaaaaccttaaggcattgggtttatgggt 40518139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 6651606 - 6651560
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    |||| ||||||||| |||||||||||||||||||  |||||||||||    
T  6651606 acaccacactcttacccaaaaccttaaggcaatgaatttatgggttc 6651560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 3669799 - 3669758
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  3669799 acaccacactcttacccaaaaccttaaggcaatgagtttatg 3669758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 34834988 - 34834947
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  34834988 acaccacactcttacccaaaaccttaaggcaatgagtttatg 34834947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 3670172 - 3670128
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||| ||| |||||||||||    
T  3670172 acaccacactcttacccaaaaccttaaggaaataggtttatgggt 3670128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 9507889 - 9507853
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  9507889 acactcttacccaaaaccttaaggtaatgggtttatg 9507853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 18371707 - 18371750
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  18371707 acaccacactcttacccaaaaccttaaggc-atgggtttatgggt 18371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 18372038 - 18372082
Alignment:
Q  289 aaacactacactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||||| ||||||||| |||||||||||| |||||| ||||||||    
T  18372038 aaacaccacactcttacccaaaaccttaaagcaatgagtttatgg 18372082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 18829893 - 18829933
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggtt 336  Q
    |||||||||||||||| | ||||||||||||||||| ||||    
T  18829893 acactcttatccaaaatcctaaggcaatgggtttataggtt 18829933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 33113413 - 33113457
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||| |||||||||||| ||||||||||    
T  33113413 acaccacactcttacccaaaatcttaaggcaatgagtttatgggt 33113457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 34835321 - 34835277
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  34835321 acaccacactcttacccaaaactttaaggcaatgagtttatgggt 34835277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 34835587 - 34835543
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  34835587 acaccacactcttacccaaaactttaaggcaatgagtttatgggt 34835543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 34835853 - 34835809
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  34835853 acaccacactcttacccaaaactttaaggcaatgagtttatgggt 34835809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 378
Target Start/End: Complemental strand, 197849 - 197754
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgat 378  Q
    |||||| ||||||| ||||||||||||||   ||||||||||||| ||||||| |||||| | ||||||||||||||||||  | |||| ||||||||    
T  197849 agagacttaaacaccacactcttatccaat--cttaaggcaatggatttatggattccctctcttatatatcctttgtttctgctattcttagtcgat 197754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 29874074 - 29874113
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29874074 acactcttatccaaaaccttaaggcaatgggtttatgggt 29874113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 36178222 - 36178266
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggttccct 340  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||    
T  36178222 acactcttacccaaaatcttaaggcaatgggtttatgggttccct 36178266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 36178651 - 36178695
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  36178651 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 36178695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 37895105 - 37895153
Alignment:
Q  289 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  37895105 aaacaccacactcttacccaaaaccttaaggcaatgggtttatgtgttc 37895153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 14745345 - 14745384
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  14745345 acactcttacccaaaaccttaaggcaatgggtttatgggt 14745384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 14745718 - 14745757
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  14745718 acactcttacccaaaaccttaaggcaatgggtttatgggt 14745757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 15880370 - 15880331
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  15880370 acactcttacccaaaaccttaaggcaatgggtttatgggt 15880331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 28226449 - 28226359
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    |||| ||||||||| | |||||| |||| ||||| ||||||||||  ||| | ||||||||||   |||||||||||| ||||||||||||    
T  28226449 acaccacactcttacctaaaaccctaagacaatgtgtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtg 28226359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 37106302 - 37106256
Alignment:
Q  289 aaacactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||| ||||||||| |||||||||||||| |||||||||||||||    
T  37106302 aaacaccacactcttacccaaaaccttaaggaaatgggtttatgggt 37106256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 6421843 - 6421799
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||    
T  6421843 acaccacactcttacccaaaaccttaaggcaataggtttatgggt 6421799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 28254283 - 28254327
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  28254283 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 28254327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 35580776 - 35580812
Alignment:
Q  297 cactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||||||| ||||||||||||||||||||||||||||    
T  35580776 cactcttacccaaaaccttaaggcaatgggtttatgg 35580812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 962705 - 962666
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  962705 acactcttacccaaaaccttaagacaatgggtttatgggt 962666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 31468801 - 31468840
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  31468801 acactcttacccaaaaccttaaggcaatgagtttatgggt 31468840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 31385834 - 31385805
Alignment:
Q  306 ccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||||||||||||||||||||||||    
T  31385834 ccaaaaccttaaggcaatgggtttatgggt 31385805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 37106036 - 37105987
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggttccct 340  Q
    |||| ||||||||| |||||| |||||||||||| |||||||||| ||||    
T  37106036 acaccacactcttacccaaaatcttaaggcaatgagtttatgggtcccct 37105987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 40679680 - 40679721
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    ||||||||| |||||| |||||||| ||||||||||||||||    
T  40679680 acactcttacccaaaatcttaaggcgatgggtttatgggttc 40679721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 3672813 - 3672773
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttat 331  Q
    |||| ||||||||| |||||| |||||||||||||||||||    
T  3672813 acaccacactcttacccaaaatcttaaggcaatgggtttat 3672773  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 5542671 - 5542715
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| | |||||||||||||||| |||||||||||    
T  5542671 acaccacactcttaccaaaaaccttaaggcaataggtttatgggt 5542715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 6422222 - 6422178
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||||    
T  6422222 acaccacactcttacctaaaaccttaaggctatgggtttatgggt 6422178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 15511541 - 15511585
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||| |||||| ||||||||||||||||    
T  15511541 acaccacactcttacccaaaatcttaagacaatgggtttatgggt 15511585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 35580494 - 35580530
Alignment:
Q  299 ctcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  35580494 ctcttacccaaaaccttaaggcaatgagtttatgggt 35580530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 36178320 - 36178356
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  36178320 acactcttacccaaaaccttaagacaatgggtttatg 36178356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 36784306 - 36784350
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  36784306 acacaacacttttatccaaaaccttaagacaaagggtttatgggt 36784350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 560 - 604
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  560 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 5469 - 5425
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    
T  5469 acaccacactcttatccaaaatcttaaggcaatgggtttatgggt 5425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 17294689 - 17294645
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  17294689 acaccacactcttacccaaaaccttaaggcaatgggtttatgggt 17294645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 45494020 - 45494062
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  45494020 acaccacactcttatccaaaactttaaggcaatgggtttatgg 45494062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 381
Target Start/End: Original strand, 4392251 - 4392328
Alignment:
Q  304 atccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgtg 381  Q
    |||||||| |||||||||   ||| |||||||  ||| ||||||||||||  |||||||||||||| |||||||||||    
T  4392251 atccaaaatcttaaggcatcaggtatatgggtctcctctgttatatatccaatgtttcctccattcatagtcgatgtg 4392328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 29798311 - 29798270
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  29798311 acaccacactcttatccaagaccttaaggcaatgggtttatg 29798270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 44290511 - 44290548
Alignment:
Q  298 actcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  44290511 actcttacccaaaaccttaaggcaatgggtttatgggt 44290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 5320011 - 5320055
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||||    
T  5320011 acactacactcttacccaaaaccttaaggctatgagtttatgggt 5320055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 26661568 - 26661612
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  26661568 acaccacactcttacccaaaaccttaaggcaatgagtttatgggt 26661612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 26661944 - 26661988
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||    
T  26661944 acaccacactcttacccaaaaccttaaggcaatcggtttatgggt 26661988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 34365037 - 34364993
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  34365037 acaccacactcttacccaaaaccttaaggctatgggtttatgggt 34364993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 22077161 - 22077200
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  22077161 acactcttatccaaaaccttagggcaatgagtttatgggt 22077200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 32168749 - 32168788
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  32168749 acactcttacccaaaacctcaaggcaatgggtttatgggt 32168788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 37556223 - 37556181
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||    
T  37556223 acaccacactcttacccaaaaccttaaggctatgggtttatgg 37556181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 38804401 - 38804443
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||||||||||||| ||||||||||||||  ||||||||||||    
T  38804401 acactacactcttacccaaaaccttaaggttatgggtttatgg 38804443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 41759595 - 41759553
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgg 333  Q
    |||| ||||||||| |||||||||||||||||||| |||||||    
T  41759595 acaccacactcttacccaaaaccttaaggcaatggatttatgg 41759553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 3550832 - 3550791
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    |||| ||||||||| ||||||| |||||||||||||||||||    
T  3550832 acaccacactcttacccaaaactttaaggcaatgggtttatg 3550791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 44290886 - 44290915
Alignment:
Q  306 ccaaaaccttaaggcaatgggtttatgggt 335  Q
    ||||||||||||||||||||||||||||||    
T  44290886 ccaaaaccttaaggcaatgggtttatgggt 44290915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 14318979 - 14318935
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||||||||| | |||||||||    
T  14318979 acaccacactcttacccaaaaccttaaggcaatagatttatgggt 14318935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 19283506 - 19283542
Alignment:
Q  296 acactcttatccaaaaccttaaggcaatgggtttatg 332  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  19283506 acactcttatccaaaaccttaaggcgatgagtttatg 19283542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 27686560 - 27686660
Alignment:
Q  281 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggtttatgggttccctatgttatatatcctttgtttcctccattcctagtcgatgt 380  Q
    |||||| || |||| ||||||||| ||||||||| ||| |||  ||  |||| |||  || | |||||||||   |||||||||||||||||||||||||    
T  27686560 agagacttagacaccacactcttacccaaaacctcaagtcaacagggatatgagttttctctcttatatatctaatgtttcctccattcctagtcgatgt 27686659  T
Q  381 g 381  Q
    |    
T  27686660 g 27686660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 30630690 - 30630730
Alignment:
Q  297 cactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    |||||||| ||||||| ||||||||||| ||||||||||||    
T  30630690 cactcttacccaaaactttaaggcaatgtgtttatgggttc 30630730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 32594762 - 32594806
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| ||||||||||||| ||||| ||||||||||    
T  32594762 acaccacactcttacccaaaaccttaagacaatgagtttatgggt 32594806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 34649544 - 34649504
Alignment:
Q  297 cactcttatccaaaaccttaaggcaatgggtttatgggttc 337  Q
    |||||||| |||||||||||||||| | |||||||||||||    
T  34649544 cactcttacccaaaaccttaaggcattaggtttatgggttc 34649504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 39066246 - 39066290
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||||||||||||||||| |||||  |||||||||    
T  39066246 acaccacactcttatccaaaaccttaagacaatgattttatgggt 39066290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 41157103 - 41157059
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||||||||| |||||| ||||||||||    
T  41157103 acaccacactcttacccaaaaccttaaagcaatgagtttatgggt 41157059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 41157487 - 41157443
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| |||||||||  |||||||| ||||||||||||||||||||    
T  41157487 acaccacactcttactcaaaacctaaaggcaatgggtttatgggt 41157443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 44043818 - 44043862
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| |||||| |||||| ||||||||||||||||    
T  44043818 acaccacactcttacccaaaatcttaagacaatgggtttatgggt 44043862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 1737 - 1781
Alignment:
Q  291 acactacactcttatccaaaaccttaaggcaatgggtttatgggt 335  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  1737 acaccacactcttaccaaaaaccttaaggcaatgggtttatgggt 1781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 1159 - 1193
Alignment:
Q  298 actcttatccaaaaccttaaggcaatgggtttatg 332  Q
    ||||||| |||||||||||||||||||||||||||    
T  1159 actcttacccaaaaccttaaggcaatgggtttatg 1193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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