View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13693_low_6 (Length: 319)
Name: NF13693_low_6
Description: NF13693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13693_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 26970014 - 26969728
Alignment:
| Q |
13 |
tcgaagaatatataaccttgagcactagcacaattcgtatatttatatatgggaagttgtcacttatatataggttctatactctacaacaaaacttagt |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26970014 |
tcgaataatatataaccttgagcactagcacaattcgtatatttatatatgggaagttgtcacttatatataggttctatactctacaacaaaacttagt |
26969915 |
T |
|
| Q |
113 |
aaacaagctcatttcatttcaatcttatcttactagaaaagaaaaacacaacaaaaactaaagctacattaattcttcttcttcaaatggcatcaaaaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26969914 |
aaacaagctcatttcatttcaatcttatcttactagaaaagaaacacacaacaaaaactaaagctacattaattcttcttcttcaaatgggatcaaaaca |
26969815 |
T |
|
| Q |
213 |
accaagacacgttgaag-aaatcagtgtaacaaaagaacaacatgatcaagagaagcccggtgtaattggatcagtgatgaaggctgt |
299 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26969814 |
accaagacacgttgaagaaaatcagt-taacaaaagaacaacatgatcaagagaagcccggtgtaattggttcagtgatgaaggctgt |
26969728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University