View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13693_low_7 (Length: 302)
Name: NF13693_low_7
Description: NF13693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13693_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 285
Target Start/End: Complemental strand, 23183249 - 23182971
Alignment:
| Q |
7 |
tctaggcggtttagggcggctaaagacgcatctgacgcagtatgtattttatgatgccaatcagtgttttcatactttggattttggtttattacagact |
106 |
Q |
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| T |
23183249 |
tctaggcggtttagggcggctaaagacgcatctgatgcagtaagtattttatgatgccaatcagtgttttcatactttggattttggtttattacagact |
23183150 |
T |
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| Q |
107 |
ttaatttttaatgctacctaatgtgtaggctgctgaagaatcaaggttaagggatgaatttgagatggagggcagaaagcttcctcttaaacaagagtca |
206 |
Q |
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| T |
23183149 |
ttaatttttaatgctacctaatgtgtaggctgctgaagaatcaaggttaagggatgaatttgagatggagggcagaaagcttcctcctaaacaagagtca |
23183050 |
T |
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| Q |
207 |
cagattttcgattcaaatgtaattacacctggaactaaattcatggttgttctgtcagttgcacttcaatactatattc |
285 |
Q |
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| T |
23183049 |
cagattttcgattcaaatgtaattacacctggaactaaattcatggctgttctgtcagttgcacttcaatactatattc |
23182971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 23895342 - 23895064
Alignment:
| Q |
6 |
atctaggcggtttagggcggctaaagacgcatctgacgcagtatgtattttatgatgccaatcagtgttttcatactttggattttggtttattacagac |
105 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23895342 |
atctaggcggtttagggcggctaaagacggatctgatgcagtatgtatttcgtgatgccaatcagtgttttcatactttggattt-ggtttattacagac |
23895244 |
T |
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| Q |
106 |
tttaatttttaatgctacctaatgtgtaggctgctgaagaatcaaggttaagggatgaatttgagatggagggcagaaagcttcctcttaaacaagagtc |
205 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
23895243 |
tttaatttttaatgttacctaatgtgtaggctgctgaagaatcaaggttaagggatgaatttgagagggagggcagaaagcttcctcctaaacaagagtc |
23895144 |
T |
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| Q |
206 |
acagattttcgattcaaatgtaattacacctggaactaaattcatggttgttctgtcagttgcacttcaatactatattc |
285 |
Q |
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| T |
23895143 |
acagattttcgattcaaatgtaatcacacctggaactgaattcatggctgttctgtcagttgcacttcaatactatattc |
23895064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 281
Target Start/End: Original strand, 7863118 - 7863259
Alignment:
| Q |
140 |
tgaagaatcaaggttaagggatgaatttgagatggagggcagaaagcttcctcttaaacaagagtcacagattttcgattcaaatgtaattacacctgga |
239 |
Q |
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|||||||||||||||| | || |||||||||| |||||||||||| ||||||| |||| | || || | ||| ||||||||||| || ||||||||| |
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| T |
7863118 |
tgaagaatcaaggttacgagaggaatttgagagggagggcagaaaacttcctcctaaagaggaatcggcaacttttgattcaaatgtcatcacacctgga |
7863217 |
T |
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| Q |
240 |
actaaattcatggttgttctgtcagttgcacttcaatactat |
281 |
Q |
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||| ||||||||| |||||||||||||||||| || |||||| |
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| T |
7863218 |
actgaattcatggctgttctgtcagttgcactacagtactat |
7863259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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