View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13694_high_1 (Length: 460)

Name: NF13694_high_1
Description: NF13694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13694_high_1
NF13694_high_1
[»] chr4 (3 HSPs)
chr4 (54-442)||(8321291-8321679)
chr4 (291-420)||(25229761-25229891)
chr4 (246-297)||(29629747-29629799)
[»] chr6 (2 HSPs)
chr6 (288-433)||(23905665-23905811)
chr6 (102-174)||(18603127-18603199)
[»] chr5 (1 HSPs)
chr5 (207-406)||(33699728-33699928)
[»] chr2 (3 HSPs)
chr2 (290-433)||(19993810-19993955)
chr2 (123-174)||(24226552-24226603)
chr2 (320-376)||(21506193-21506249)
[»] chr7 (2 HSPs)
chr7 (318-378)||(27223412-27223472)
chr7 (320-431)||(11728443-11728552)
[»] chr1 (6 HSPs)
chr1 (305-406)||(12085457-12085559)
chr1 (288-406)||(26645949-26646067)
chr1 (317-375)||(26330487-26330545)
chr1 (319-376)||(15984112-15984169)
chr1 (290-406)||(17621998-17622115)
chr1 (318-359)||(20185911-20185952)
[»] scaffold0021 (1 HSPs)
scaffold0021 (294-397)||(156500-156605)
[»] scaffold0008 (1 HSPs)
scaffold0008 (206-433)||(264121-264349)
[»] chr8 (4 HSPs)
chr8 (243-415)||(260587-260760)
chr8 (243-415)||(655161-655334)
chr8 (243-415)||(840896-841069)
chr8 (101-150)||(17748317-17748366)
[»] chr3 (1 HSPs)
chr3 (325-406)||(21806638-21806720)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 54 - 442
Target Start/End: Original strand, 8321291 - 8321679
Alignment:
54 tttttattgcttctcaaccttgacaagatgttttgatcggttgatttgaagtatgtatcaaattcattttgatacgagaagagatttgatgattgtgctt 153  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
8321291 tttttattgcttctcaaccttgacaagatgttttgatcggttggtttgaagtatgtatcaaattcattttgatacgagaagagattagatgattgtgctt 8321390  T
154 gttgctaaactatcaaataaaggataaataaactgtcacaaagaagttacattggttcactctaactaggctagcccaatctccataaaatgtgagatta 253  Q
    ||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||  || || ||||||||||||||||||    
8321391 gttgcaaaactatcaaataaaggataaagaagctgtcacaaagaagttacattggttcactctaactaggctagaacagtccccataaaatgtgagatta 8321490  T
254 tccaataatggtgtctaagatacctctcaaatgttgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagacttt 353  Q
    || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
8321491 tctaataatggtgtctgagatacctctcagatgttgcacactttctcttcatttctggtctccttgaccttacaagttttggacaacctctttagacttt 8321590  T
354 agctatcatacaatccacctttatacctaaagatgattaatgaaactttacaactcattacataattattttgtgatcttagtcttatc 442  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
8321591 agctatcatacaatccacctttatacctaaagataattaatgaaactttacaactcattacatgattattttgtgatcatagtcttatc 8321679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 420
Target Start/End: Complemental strand, 25229891 - 25229761
Alignment:
291 acactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatga 389  Q
    ||||||| ||||| |||||||| |   |||||||||||||| | || |||||||| |  ||||||||| || | |||||||||| ||| ||||||||  |    
25229891 acactttgtcttcttttctggtctagctgaccttacaagttctagataacctcttcatgctttagctaccacataatccaccttcatatcctaaagagaa 25229792  T
390 ttaatgaaactttacaactcattacataatt 420  Q
    ||| ||||||||||||| | |||||| ||||    
25229791 ttagtgaaactttacaattgattacaaaatt 25229761  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 29629747 - 29629799
Alignment:
246 tgagattatccaataatggtgtctaagata-cctctcaaatgttgcacacttt 297  Q
    |||||||||||||||||||||  | ||||| ||||||||||||| ||||||||    
29629747 tgagattatccaataatggtgcttgagataccctctcaaatgttacacacttt 29629799  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 433
Target Start/End: Complemental strand, 23905811 - 23905665
Alignment:
288 tgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacc-taaaga 386  Q
    |||| |||||||||| ||||||||| | |  |||| || ||||||||||||| ||||| |||||||| ||| || |||||||  ||||||||| ||||||    
23905811 tgcaaactttctcttaatttctggtttacccgaccgtaaaagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaaga 23905712  T
387 tgattaatgaaactttacaactcattacataattattttgtgatctt 433  Q
     ||||| |||| ||||| |||| ||||||||||| ||||||||||||    
23905711 ggattagtgaagctttagaactgattacataatttttttgtgatctt 23905665  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 18603127 - 18603199
Alignment:
102 aagtatgtatcaaattcattttgatacgagaagagatttgatgattgtgcttgttgctaaactatcaaataaa 174  Q
    |||||||||||||| | | |||||||| | || ||||| ||||||| |||||| | || ||||||||||||||    
18603127 aagtatgtatcaaaatgaatttgatacaataaaagattagatgattttgcttgcttctgaactatcaaataaa 18603199  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 406
Target Start/End: Original strand, 33699728 - 33699928
Alignment:
207 ggttcactctaactaggctagcccaatctccataaaatgtgagattatccaataatggtgtctaagatacc-tctcaaatgttgcacactttctcttcat 305  Q
    ||||||| |||||||||||||     ||||||  || ||||||||| ||||||| |||||||| ||||||| ||||| ||  |||||||||||||||  |    
33699728 ggttcaccctaactaggctagtatggtctccactaactgtgagattttccaata-tggtgtctgagataccctctcagattctgcacactttctcttatt 33699826  T
306 ttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttac 404  Q
    |||| || |     ||||||||| |||||| || |||||| |||||||||||   | |||||||||||||||| |||||||| ||||| |||| ||||||    
33699827 ttctagtctaaccaaccttacaaattttgggcagcctcttcagactttagctgctacacaatccacctttataccctaaagaggattagtgaagctttac 33699926  T
405 aa 406  Q
    ||    
33699927 aa 33699928  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 433
Target Start/End: Original strand, 19993810 - 19993955
Alignment:
290 cacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatg 388  Q
    |||||||||||||| |||||||| | | | ||  |||||| ||| ||||||||||| ||| |||||||| || |||||||||||| ||| |||||||| |    
19993810 cacactttctcttcttttctggtctacctaacaatacaagatttagacaacctcttcagattttagctaccacacaatccaccttaataccctaaagagg 19993909  T
389 attaatgaaactttacaactcattacataattatt-ttgtgatctt 433  Q
    |||| |||| ||||||| || |||| | |||| || ||||||||||    
19993910 attagtgaagctttacatcttattatacaattgttcttgtgatctt 19993955  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 24226603 - 24226552
Alignment:
123 tgatacgagaagagatttgatgattgtgcttgttgctaaactatcaaataaa 174  Q
    |||||| | ||||||||||||||||||||||| | |||||||||||||||||    
24226603 tgatacaataagagatttgatgattgtgcttgcttctaaactatcaaataaa 24226552  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 21506193 - 21506249
Alignment:
320 accttacaagttttggacaacctctttagactttagctatcatacaatccaccttta 376  Q
    |||||||| |||||| |||||||||||||||||| || | || ||||||||||||||    
21506193 accttacatgttttgcacaacctctttagacttttgcaaccacacaatccaccttta 21506249  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 27223472 - 27223412
Alignment:
318 tgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata 378  Q
    ||||| |||||||||| ||||||||||||||||||||| || || ||||||||||||||||    
27223472 tgaccgtacaagttttagacaacctctttagactttagataccacacaatccacctttata 27223412  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 431
Target Start/End: Original strand, 11728443 - 11728552
Alignment:
320 accttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttacaactcattacataa 418  Q
    |||||| ||| ||||||||||   |||| ||| ||| || || |||||||||||||||| |||||||| |||||||||| ||||||||||  ||||| ||    
11728443 accttagaagatttggacaac---tttatactctagttaccacacaatccacctttatatcctaaagaggattaatgaagctttacaactgtttacacaa 11728539  T
419 ttattttgtgatc 431  Q
    || ||||||||||    
11728540 ttgttttgtgatc 11728552  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 12085457 - 12085559
Alignment:
305 tttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacc-taaagatgattaatgaaacttta 403  Q
    |||||||| | | ||||||||| ||||||||||||| |||| ||| |||| ||| || |||||  ||||||||||| |||| ||||||| ||||||||||    
12085457 tttctggtctacatgaccttactagttttggacaacatcttcagagtttaactaccacacaattaacctttataccttaaatatgattagtgaaacttta 12085556  T
404 caa 406  Q
    |||    
12085557 caa 12085559  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 406
Target Start/End: Complemental strand, 26646067 - 26645949
Alignment:
288 tgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttatacct-aaaga 386  Q
    ||||||| || |||||||| ||||| | |||| || |||||||||| ||||  ||||| |||||||| ||| || |||||||||||||||| || |||||    
26646067 tgcacacattatcttcatt-ctggtttacttggccatacaagttttagacatgctcttcagactttaactaccacacaatccacctttataactcaaaga 26645969  T
387 tgattaatgaaactttacaa 406  Q
     ||||| |||| ||||||||    
26645968 agattagtgaagctttacaa 26645949  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 26330487 - 26330545
Alignment:
317 ttgaccttacaagttttggacaacctctttagactttagctatcatacaatccaccttt 375  Q
    |||| |||||||||||||||||||||||| |||||||| | | || |||||||||||||    
26330487 ttgatcttacaagttttggacaacctcttcagactttaacaaccacacaatccaccttt 26330545  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 15984112 - 15984169
Alignment:
319 gaccttacaagttttggacaacctctttagactttagctatcatacaatccaccttta 376  Q
    |||||||||||||||| ||| |||||  ||||||| || |||||||||||||||||||    
15984112 gaccttacaagttttgcacatcctctccagacttttgcaatcatacaatccaccttta 15984169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 406
Target Start/End: Complemental strand, 17622115 - 17621998
Alignment:
290 cacactttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatg 388  Q
    ||||||||||| |||||||| || | ||| ||| |||||||||||  || ||| ||  |||||||| || || |||||||||||||||| | |||||| |    
17622115 cacactttctcgtcatttctagtctactttaccatacaagttttgagcagccttttcggactttagttaccacacaatccacctttatagcataaagagg 17622016  T
389 attaatgaaactttacaa 406  Q
    |||  |||| ||||||||    
17622015 attggtgaagctttacaa 17621998  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 20185952 - 20185911
Alignment:
318 tgaccttacaagttttggacaacctctttagactttagctat 359  Q
    |||||||||||||||| |||| |||||||||||||| |||||    
20185952 tgaccttacaagtttttgacagcctctttagactttggctat 20185911  T

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Target: scaffold0021 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 397
Target Start/End: Complemental strand, 156605 - 156500
Alignment:
294 ctttctcttcatttctggtatccttgaccttacaagttttggacaacctctttagacttt-agctatcatacaatccacctttat-acctaaagatgatt 391  Q
    |||||||||| |||||||| | ||| ||| || |||||||||||| ||| || ||||||| ||||| ||||||||| |||||||| ||||||| | ||||    
156605 ctttctcttcttttctggtctacttaaccatataagttttggacagcctattcagactttaagctaccatacaatcaacctttataacctaaaaaggatt 156506  T
392 aatgaa 397  Q
    ||||||    
156505 aatgaa 156500  T

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Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 433
Target Start/End: Original strand, 264121 - 264349
Alignment:
206 tggttcactctaactaggctagcccaatctccataaaatgtgagattatccaataatggtgtctaagatacc-tctcaaatgttgcacactttctcttca 304  Q
    ||||||||  ||||| |||||| |||||| ||| | | ||||||||| ||||||| ||||||| |||||||| ||| |||   |||||||| |  ||||     
264121 tggttcaccttaactgggctagtccaatccccacagactgtgagattttccaata-tggtgtcaaagataccctcttaaaatctgcacactcttacttct 264219  T
305 tttctggtatccttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttat-acctaaagatgattaatgaaacttta 403  Q
    |||||| | |   |||||||||||||||  |  ||||||||||||  ||||||| || ||||||| | ||||| ||||||||| ||||| ||||  ||||    
264220 tttctgatctatctgaccttacaagtttaagttaacctctttagaacttagctaccacacaatccgcatttataacctaaagaggattagtgaagtttta 264319  T
404 caactcattacataattattttgtgatctt 433  Q
    |||||  | ||| |||| ||||||||||||    
264320 caactattaacacaattgttttgtgatctt 264349  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 415
Target Start/End: Complemental strand, 260760 - 260587
Alignment:
243 atgtgagattatccaataatggtgtctaagatacc-tctcaaatgttgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacc 341  Q
    |||||||||| ||||||| |||||| | ||||||| ||||| ||  | |||| ||||||||| ||| |||| | | | |||||||||||||   || ||     
260760 atgtgagattttccaata-tggtgtatgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactaca 260662  T
342 tctttagactttagctatcatacaatccacctttatacc-taaagatgattaatgaaactttacaactcattaca 415  Q
    |||| | |||||||||| || | |||||||||||||||| ||||||  |||| |||| |||||||| ||| ||||    
260661 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagctttacaaatcaataca 260587  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 415
Target Start/End: Original strand, 655161 - 655334
Alignment:
243 atgtgagattatccaataatggtgtctaagatacc-tctcaaatgttgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacc 341  Q
    |||||||||| ||||||| |||||| | ||||||| ||||| ||  | |||| ||||||||| ||| |||| | | | |||||||||||||   || ||     
655161 atgtgagattttccaata-tggtgtatgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactaca 655259  T
342 tctttagactttagctatcatacaatccacctttatacc-taaagatgattaatgaaactttacaactcattaca 415  Q
    |||| | |||||||||| || | |||||||||||||||| ||||||  |||| |||| |||||||| ||| ||||    
655260 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagctttacaaatcaataca 655334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 415
Target Start/End: Original strand, 840896 - 841069
Alignment:
243 atgtgagattatccaataatggtgtctaagatacc-tctcaaatgttgcacactttctcttcatttctggtatccttgaccttacaagttttggacaacc 341  Q
    |||||||||| ||||||| |||||| | ||||||| ||||| ||  | |||| ||||||||| ||| |||| | | | |||||||||||||   || ||     
840896 atgtgagattttccaata-tggtgtatgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactaca 840994  T
342 tctttagactttagctatcatacaatccacctttatacc-taaagatgattaatgaaactttacaactcattaca 415  Q
    |||| | |||||||||| || | |||||||||||||||| ||||||  |||| |||| |||||||| ||| ||||    
840995 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagctttacaaatcaataca 841069  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 17748366 - 17748317
Alignment:
101 gaagtatgtatcaaattcattttgatacgagaagagatttgatgattgtg 150  Q
    ||||||||||||||| | | |||||||| |||||||||| ||||||||||    
17748366 gaagtatgtatcaaaatgaatttgatacaagaagagattggatgattgtg 17748317  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 21806720 - 21806638
Alignment:
325 acaagttttggacaacctctttagactttagctatcatacaatccacctttata-cctaaagatgattaatgaaactttacaa 406  Q
    ||||||||||||||  ||||| | |||||||||| || || ||||||||||||| |||||||| ||||| | || ||||||||    
21806720 acaagttttggacagtctcttcaaactttagctaccacacgatccacctttataccctaaagaagattactaaagctttacaa 21806638  T

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