View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13694_low_2 (Length: 297)
Name: NF13694_low_2
Description: NF13694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13694_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 30337587 - 30337312
Alignment:
| Q |
7 |
ttatgtgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgagaacgacgcctgaatgggagaaaggttatctatgaaaacgagttgtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337587 |
ttatgtgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgagaacgacccctgaatgggagaaaggttatctatgaaaacgagttgtt |
30337488 |
T |
|
| Q |
107 |
ggagagttgtagggaaagtggaaagagagataatgatagggttttctcggttgttgaagcattcacggaagatgagttttccaaggtagttgaaaggggt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337487 |
ggagagttgtagggaaagtggaaagagagataatgataggattttcacggttgttgaagcattcacggaagatgagttttccaaggtagttgaaaggggt |
30337388 |
T |
|
| Q |
207 |
gaaaagagttgagttaaaggtagcattatgggagcaaggtagggtgggattttgtttttcatcggcatcatagttg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30337387 |
gaaaagagttgagttaaaggtagcattatgggagcaaggtagggtgggattttgtttttcatcggaatcatagttg |
30337312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 30325886 - 30325748
Alignment:
| Q |
71 |
gaatgggagaaaggttatctatgaaaacgagttgttggagagttgtagggaaagtggaaagagagataatgatagggttttctcggttgttgaagcattc |
170 |
Q |
| |
|
||||||||||| |||| || | ||||| || |||| |||| || |||||||| ||||||||||| | || ||||||||| |||||||||||||||| |
|
|
| T |
30325886 |
gaatgggagaagggttgtcaaagaaaataagatgttctagagatggagggaaaggggaaagagagaggttaatggggttttctgggttgttgaagcattc |
30325787 |
T |
|
| Q |
171 |
acggaagatgagttttccaaggtagttgaaaggggtgaa |
209 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
30325786 |
acggaaggtgagtaatcggaggtagttgaaaggggtgaa |
30325748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University