View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13695_high_2 (Length: 516)
Name: NF13695_high_2
Description: NF13695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13695_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 11 - 516
Target Start/End: Complemental strand, 36557314 - 36556808
Alignment:
| Q |
11 |
aatgacaatagccatcggagtagattataaagtaaagacagtgtgcgaattcaggactgttaaa-tagcaaaattatccaaatgaaaaacaagtgatgaa |
109 |
Q |
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| T |
36557314 |
aatgacaatagccatcggagtagattataaagtaaagacagtgtgcgaattcaggactgttaaaatagcaaaattatccaaatgaaaaacaagtgatgaa |
36557215 |
T |
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| Q |
110 |
gaagaatatttttagtcaatccaagattatcaatacaaagttttatcctaattatgttgaaaactaaacataaacaaatacaataccacataagaattga |
209 |
Q |
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| T |
36557214 |
gaagaatatttttagtcaatccaagattatcaatacaaagttttatcctaattatgttgaaaactaaacataaacaaatacaataccacataagaattga |
36557115 |
T |
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| Q |
210 |
agacataccacggtagattttaaaggtaaaataattagtgttacgtgaatgttgaacccacataaatgccaacttcaagttcaccaaaatcctatatatg |
309 |
Q |
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| T |
36557114 |
agacataccacggtagattttaaaggtaaaataattagtgttacgtgaatgttgaacccacataaatgccaacttcaagttcaccaaaatcctatatatg |
36557015 |
T |
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| Q |
310 |
catgattttggtttgaacaaacacatgcgtgatctactgttgtttttcatttatagcctcgggttgttcctccttgtttttcggctttgcaggggctacc |
409 |
Q |
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| T |
36557014 |
catgattttggtttgaacaaacacatgcgtgatctactgttgtttgtcatttatagcctcgggttgttcctccttgtttttcggctttgcaggggctacc |
36556915 |
T |
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| Q |
410 |
ttggccgggtttgaacgctctgcctgtgagaataaaatcaagacctgcatgaggccggtaacaactgccaaaccaaaagttgaaaatgcaacgcccttcc |
509 |
Q |
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| T |
36556914 |
ttggccgggtttgaacgctctgcctgtgagaataaaatcaagacctgcatgaggccggtaacaactgccaaaccaaaagttgaaaatgcaacgcccttcc |
36556815 |
T |
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| Q |
510 |
atgatga |
516 |
Q |
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| T |
36556814 |
atgatga |
36556808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 510
Target Start/End: Original strand, 21621559 - 21621675
Alignment:
| Q |
394 |
ctttgcaggggctaccttggccgggtttgaacgctctgcctgtgagaataaaatcaagacctgcatgaggccggtaacaactgccaaaccaaaagttgaa |
493 |
Q |
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| T |
21621559 |
ctttgaaggggataccttggcagggtttgaacgctcggattgtgagaacttaatcaagaattgcatgagtgcggtgacaattgccaaactaaatactgaa |
21621658 |
T |
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| Q |
494 |
aatgcaacgcccttcca |
510 |
Q |
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| T |
21621659 |
aatgcaacacccttcca |
21621675 |
T |
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