View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13695_high_8 (Length: 321)
Name: NF13695_high_8
Description: NF13695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13695_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 19283019 - 19282703
Alignment:
| Q |
7 |
aaaaccaaaccaacaaaacaaatatataaaccaagtctttattcagattcatttcatttatatgcataagactaaagatatgtcctcatattcacatatc |
106 |
Q |
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| T |
19283019 |
aaaaccaaaccaacaaaacaaatatataaaccaagtctttattcagattcatttcatttatatgcataagactaaagatatgtcctcatattcacatatc |
19282920 |
T |
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| Q |
107 |
aacacaaaccaatatccagaatttcacacnnnnnnnnnnn--gagcaattaaatctaaatcaacttgaacgatgagcactaccaacacttttaccatcct |
204 |
Q |
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| T |
19282919 |
aacacaaaccaatattcagaatttcacacccaaaaaaaaaaagagcaattaaatctaaatcaacttgaacgatgagcactaccaacacttttaccatcct |
19282820 |
T |
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| Q |
205 |
caccagcttcttgattctgtggagatcacaaaagctgtgcctcaactggattagcatgaccaacaccaacatgataattactttgttgctctcctccttg |
304 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
19282819 |
caccagcttcttgattctgtggagataacaaaagctgtgcctcaactggattagcatgagcaacaccaacatgataattatgttgttgctctcctccttg |
19282720 |
T |
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| Q |
305 |
ctgctgaatctgataat |
321 |
Q |
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||| |||||||||||| |
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| T |
19282719 |
ctgtggaatctgataat |
19282703 |
T |
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