View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13695_low_3 (Length: 458)
Name: NF13695_low_3
Description: NF13695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13695_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 60 - 445
Target Start/End: Complemental strand, 36463252 - 36462867
Alignment:
| Q |
60 |
aggtacctatagctgtaggagtaagttcatatgaggctgtgcttttatacaaagggaaaaaagttatagcttccaagggagatcaaggaataaattggag |
159 |
Q |
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| T |
36463252 |
aggtacctatagctgtaggagtaagttcatatgaggctgtgcttttatacaaagggaaaaaagttatagcttccaagggagatcaaggaataaattggag |
36463153 |
T |
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| Q |
160 |
tgtgaagcagttaattctatattgttcatgtggcataattgctggcttaattggtggcttacttggtcttggtggaggatttatcttagcgccactcttc |
259 |
Q |
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| T |
36463152 |
tgtgaagcagttaattctatattgttcatgcggcataattgctggcttaattggtggcttacttggtcttggtggaggatttatcttagcgccactcttc |
36463053 |
T |
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| Q |
260 |
cttggacttggaatccctcctcaggtatctttattttatttcttctcttttccataatatacatatatatactaattaaatgagatttatgagagtatgt |
359 |
Q |
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| T |
36463052 |
cttggacttggaatccctcctcaggtatctttattttatttcttctcttttccataatatacatatatatactaattaaatgagatttatgagagtatgt |
36462953 |
T |
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| Q |
360 |
ttgcaattctgattcgataattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtg |
445 |
Q |
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| T |
36462952 |
ttgcaattctgattcgataattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtg |
36462867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 60 - 286
Target Start/End: Complemental strand, 36472402 - 36472176
Alignment:
| Q |
60 |
aggtacctatagctgtaggagtaagttcatatgaggctgtgcttttatacaaagggaaaaaagttatagcttccaagggagatcaaggaataaattggag |
159 |
Q |
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| T |
36472402 |
aggtacctatagctataggagtgagtggatatgaggctatacttttatacaaaggaaaaagagttatagcttccaatggagatcaaggaataaattggag |
36472303 |
T |
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| Q |
160 |
tgtgaagcagttaattctatattgttcatgtggcataattgctggcttaattggtggcttacttggtcttggtggaggatttatcttagcgccactcttc |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||| ||| |
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| T |
36472302 |
tgtgaagcagttaattctatattgttcatgtggcataattgctggaataatcggtggcttgcttggtcttggtggaggatttatcttagggccacttttc |
36472203 |
T |
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| Q |
260 |
cttggacttggaatccctcctcaggta |
286 |
Q |
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| T |
36472202 |
attggacttggaatccctcctcaggta |
36472176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 378 - 445
Target Start/End: Complemental strand, 36472064 - 36471997
Alignment:
| Q |
378 |
aattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtg |
445 |
Q |
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|||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36472064 |
aattttctattaaggtggcaagtgctacatccacttttgcaatgacattttctgcatctatgtctgtg |
36471997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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