View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13695_low_4 (Length: 405)
Name: NF13695_low_4
Description: NF13695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13695_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 12 - 401
Target Start/End: Original strand, 50826565 - 50826954
Alignment:
| Q |
12 |
atgagctgtgattttttatatgtacagtgaaattgttttccttcaatactatacaagaactattggagatgatacagaggactaatgcctaccccctaag |
111 |
Q |
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| T |
50826565 |
atgagctgtgattttttatatgtacagtgaaattgttttccttcaatactatacaagaactattggagatgatacagaggactaatgcctaccccctaag |
50826664 |
T |
|
| Q |
112 |
aaattcattcatttagaatcaaaacccctcccccctaaccaattattattggttcggtatattgttctgggaactgacattcctatctcaatggtaataa |
211 |
Q |
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| T |
50826665 |
aaattcattcatttagaatcaaaacccctcccccctaaccaattattattggttcggtatattgttctgggaactgacattactatctcaatggtaataa |
50826764 |
T |
|
| Q |
212 |
agaggaaaatgcaaaaaatgatacttttcaaaccgaagagcaaatgtgctcttctatgccaccattggttgaacagatgtccgcaagaataagatcaaac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |
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| T |
50826765 |
agaggaaaatgcaaaaaatgatacttttcaaaccgaagagcaaatgtgctcttctatgccaccattggttgaacggatgtcagaaagaataagatcaaac |
50826864 |
T |
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| Q |
312 |
agggggctcctctacaccacatttgttgaacggatatcagcaagaataaaatcaaacgaacaaattgacgttgcgaaagggcaaaatttg |
401 |
Q |
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| T |
50826865 |
agggggctcttctacaccacatttgttgaacggatatcagcaagaataaaatcaaacgaacaaattgacgttgcgaaagggcaaaatttg |
50826954 |
T |
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