View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13695_low_7 (Length: 352)
Name: NF13695_low_7
Description: NF13695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13695_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 36557521 - 36557853
Alignment:
| Q |
1 |
agttgtggtaaaacatgtgatattacccttgaagataaggaaatcaaaaaatttgttaaatgaaaaacaagcttatgttactggaagattaagacaaaag |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36557521 |
agttgtggtaaaatatgtgatattacccttgaagataaggaaatcaaaaaaattgttaaatgaaaaacaagctgatgttactggaagattaagacaaaag |
36557620 |
T |
|
| Q |
101 |
ctatatacgttgccataaaatgtgaatgagaagtgcattagtggtgacatcccacgtgagggaacaaggtttaatgactcat-atttttcaaggccccct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||| |
|
|
| T |
36557621 |
ctatatacgttgccataaaatgtgaatgagaagtgcattagtggtgacatcccacgtgagggaacacggtttaatgactcataatttttcaacggcccct |
36557720 |
T |
|
| Q |
200 |
cataatgggaaacacaggagccaatcagagtgttttgtttgatggtggggacaacnnnnnnnccttaaaagatatgggcttcaagttggtggctcgggtg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36557721 |
cataatgggaaacacaggagccaatcagagtgttttgtttgatggtggggacaac-aaaaaaccttaaaagatatgggcttcaagttggtggctcgggtg |
36557819 |
T |
|
| Q |
300 |
ggcttggcccacttgggtttagtgatgacgtgtc |
333 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
36557820 |
ggcttgacccacttgggtttagtgatgacgtgtc |
36557853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University