View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13697_high_15 (Length: 238)

Name: NF13697_high_15
Description: NF13697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13697_high_15
NF13697_high_15
[»] chr4 (2 HSPs)
chr4 (18-220)||(55331008-55331210)
chr4 (18-126)||(55336443-55336551)
[»] chr2 (10 HSPs)
chr2 (26-229)||(8395289-8395492)
chr2 (26-229)||(8406080-8406283)
chr2 (26-127)||(8439297-8439398)
chr2 (39-101)||(8368479-8368541)
chr2 (39-101)||(8400869-8400931)
chr2 (78-124)||(8404185-8404231)
chr2 (39-101)||(8422446-8422508)
chr2 (26-127)||(8375705-8375806)
chr2 (26-127)||(8412200-8412301)
chr2 (26-127)||(8434298-8434399)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 55331008 - 55331210
Alignment:
Q  18 ctttttgcaggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaa 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331008 ctttttgctggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaa 55331107  T
Q  118 ctttctccatgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331108 ctttctccatgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtt 55331207  T
Q  218 tct 220  Q
    |||    
T  55331208 tct 55331210  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 55336443 - 55336551
Alignment:
Q  18 ctttttgcaggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaa 117  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| | ||||| | |||||||||||||||||||||||||||||| |    
T  55336443 ctttttgcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaaca 55336542  T
Q  118 ctttctcca 126  Q
    |||||||||    
T  55336543 ctttctcca 55336551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 8395492 - 8395289
Alignment:
Q  26 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 125  Q
    ||||||||||  |||||| | | ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||||||||| |||    
T  8395492 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc 8395393  T
Q  126 atgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttctctgct 225  Q
    ||   || ||| |||||||  ||  |  ||||||||||||| | |||  |||  || | |||| |||| |||||||| ||||||||||| ||||| || |    
T  8395392 attgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttgtt 8395293  T
Q  226 cctc 229  Q
    ||||    
T  8395292 cctc 8395289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 8406080 - 8406283
Alignment:
Q  26 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 125  Q
    ||||||||||  |||||| | | ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||||||||| |||    
T  8406080 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc 8406179  T
Q  126 atgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttctctgct 225  Q
    ||   || ||| |||||||  ||  |  ||||||||||||| | |||  |||  || | |||| |||| |||||||| ||||||||||| ||||| || |    
T  8406180 attgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttgtt 8406279  T
Q  226 cctc 229  Q
    ||||    
T  8406280 cctc 8406283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 8439297 - 8439398
Alignment:
Q  26 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 125  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||||||||||||| || |||    
T  8439297 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttcc 8439396  T
Q  126 at 127  Q
    ||    
T  8439397 at 8439398  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 8368479 - 8368541
Alignment:
Q  39 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 101  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8368479 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8368541  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 8400931 - 8400869
Alignment:
Q  39 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 101  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8400931 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8400869  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 8404185 - 8404231
Alignment:
Q  78 cctaataaaggaagtggataagctttgtcaagtgccaaaactttctc 124  Q
    |||||||||||||||||||| ||||| ||||| |||||||| |||||    
T  8404185 cctaataaaggaagtggataggctttatcaagagccaaaaccttctc 8404231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 8422508 - 8422446
Alignment:
Q  39 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 101  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8422508 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8422446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 8375806 - 8375705
Alignment:
Q  26 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 125  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8375806 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8375707  T
Q  126 at 127  Q
    ||    
T  8375706 at 8375705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 8412200 - 8412301
Alignment:
Q  26 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 125  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8412200 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8412299  T
Q  126 at 127  Q
    ||    
T  8412300 at 8412301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 8434298 - 8434399
Alignment:
Q  26 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 125  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8434298 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8434397  T
Q  126 at 127  Q
    ||    
T  8434398 at 8434399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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