View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13697_low_12 (Length: 280)

Name: NF13697_low_12
Description: NF13697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13697_low_12
NF13697_low_12
[»] chr3 (18 HSPs)
chr3 (86-272)||(6269427-6269613)
chr3 (86-273)||(22968444-22968631)
chr3 (86-273)||(19390126-19390313)
chr3 (81-273)||(39771765-39771957)
chr3 (89-273)||(40081741-40081922)
chr3 (90-261)||(34084134-34084305)
chr3 (84-273)||(11018212-11018401)
chr3 (114-273)||(45182989-45183148)
chr3 (115-273)||(27935187-27935345)
chr3 (106-257)||(45335875-45336025)
chr3 (118-262)||(6930905-6931049)
chr3 (114-273)||(33040961-33041120)
chr3 (86-261)||(6503581-6503756)
chr3 (114-257)||(19565517-19565660)
chr3 (226-273)||(22922215-22922262)
chr3 (198-273)||(35514354-35514429)
chr3 (130-186)||(5135293-5135349)
chr3 (90-162)||(22922141-22922213)
[»] chr5 (21 HSPs)
chr5 (85-273)||(36293621-36293809)
chr5 (81-273)||(26283318-26283510)
chr5 (86-273)||(39434676-39434863)
chr5 (89-262)||(10033910-10034083)
chr5 (89-262)||(13817960-13818133)
chr5 (85-262)||(39657517-39657694)
chr5 (125-273)||(16155016-16155164)
chr5 (114-273)||(12278860-12279019)
chr5 (90-272)||(1776377-1776559)
chr5 (136-262)||(16333887-16334013)
chr5 (93-273)||(19985926-19986106)
chr5 (86-257)||(3155647-3155818)
chr5 (114-273)||(17332551-17332710)
chr5 (120-273)||(33430335-33430488)
chr5 (114-273)||(31680375-31680534)
chr5 (116-273)||(37254651-37254808)
chr5 (125-261)||(31501728-31501864)
chr5 (123-273)||(43068894-43069044)
chr5 (108-273)||(36291373-36291538)
chr5 (130-186)||(28801311-28801367)
chr5 (89-142)||(14316641-14316694)
[»] chr7 (17 HSPs)
chr7 (86-271)||(14777109-14777294)
chr7 (86-262)||(5555467-5555643)
chr7 (85-262)||(3114107-3114284)
chr7 (90-262)||(8394109-8394281)
chr7 (90-273)||(36630800-36630983)
chr7 (114-273)||(34389056-34389215)
chr7 (114-273)||(37002144-37002303)
chr7 (115-273)||(35090177-35090335)
chr7 (122-273)||(40920003-40920154)
chr7 (114-271)||(8867733-8867890)
chr7 (114-273)||(26624753-26624913)
chr7 (125-273)||(36658200-36658348)
chr7 (130-272)||(38638237-38638379)
chr7 (114-273)||(43184468-43184627)
chr7 (130-262)||(33685588-33685720)
chr7 (198-273)||(7002817-7002892)
chr7 (198-273)||(7048688-7048763)
[»] chr2 (19 HSPs)
chr2 (86-273)||(41251634-41251821)
chr2 (86-273)||(17445041-17445226)
chr2 (83-273)||(6403804-6403994)
chr2 (86-262)||(35962695-35962871)
chr2 (86-262)||(42439966-42440142)
chr2 (83-262)||(32127152-32127331)
chr2 (86-262)||(18981597-18981772)
chr2 (90-273)||(31581622-31581805)
chr2 (86-243)||(2958131-2958287)
chr2 (85-262)||(16405579-16405756)
chr2 (114-272)||(8147359-8147518)
chr2 (114-273)||(45418591-45418750)
chr2 (114-272)||(771007-771165)
chr2 (114-273)||(44084603-44084762)
chr2 (131-273)||(12756837-12756979)
chr2 (89-262)||(2285845-2286018)
chr2 (134-262)||(8059344-8059472)
chr2 (115-181)||(7072644-7072710)
chr2 (113-186)||(4555298-4555370)
[»] scaffold0069 (1 HSPs)
scaffold0069 (84-273)||(17820-18009)
[»] chr4 (35 HSPs)
chr4 (86-273)||(20129290-20129477)
chr4 (82-273)||(13012164-13012355)
chr4 (86-273)||(47500753-47500940)
chr4 (86-273)||(26439279-26439466)
chr4 (86-273)||(34407284-34407471)
chr4 (86-273)||(25930688-25930875)
chr4 (86-273)||(43355884-43356071)
chr4 (86-262)||(29319716-29319892)
chr4 (90-273)||(36382346-36382528)
chr4 (89-262)||(40528996-40529171)
chr4 (114-273)||(30216742-30216901)
chr4 (89-261)||(17511245-17511417)
chr4 (83-261)||(43143596-43143774)
chr4 (114-261)||(42333788-42333935)
chr4 (114-262)||(3292907-3293055)
chr4 (118-273)||(29995983-29996138)
chr4 (108-273)||(48989330-48989495)
chr4 (114-271)||(50205079-50205236)
chr4 (114-262)||(6690246-6690394)
chr4 (198-273)||(6235612-6235687)
chr4 (116-255)||(10352902-10353041)
chr4 (136-273)||(44156681-44156818)
chr4 (107-257)||(30077647-30077797)
chr4 (21-85)||(36234753-36234817)
chr4 (106-260)||(26448053-26448206)
chr4 (118-186)||(48129978-48130046)
chr4 (83-186)||(27363338-27363441)
chr4 (133-261)||(28877262-28877390)
chr4 (130-261)||(35545977-35546108)
chr4 (198-261)||(13392893-13392956)
chr4 (198-261)||(13396032-13396095)
chr4 (125-186)||(45194195-45194256)
chr4 (118-186)||(30109968-30110036)
chr4 (21-85)||(36216817-36216881)
chr4 (198-273)||(1817809-1817884)
[»] scaffold0002 (1 HSPs)
scaffold0002 (86-273)||(480457-480644)
[»] chr6 (11 HSPs)
chr6 (86-273)||(398597-398784)
chr6 (86-262)||(34948769-34948945)
chr6 (86-262)||(13837801-13837977)
chr6 (114-273)||(18339114-18339273)
chr6 (114-273)||(28996738-28996897)
chr6 (114-257)||(29743291-29743434)
chr6 (125-273)||(33229336-33229484)
chr6 (125-186)||(31028451-31028512)
chr6 (22-85)||(25467132-25467195)
chr6 (21-56)||(29135114-29135149)
chr6 (125-186)||(24697904-24697965)
[»] chr1 (11 HSPs)
chr1 (86-273)||(26144235-26144422)
chr1 (86-262)||(7433425-7433601)
chr1 (93-273)||(32982056-32982236)
chr1 (89-273)||(42310941-42311125)
chr1 (131-273)||(3829009-3829150)
chr1 (86-262)||(35907532-35907708)
chr1 (106-273)||(321377-321544)
chr1 (86-186)||(23313218-23313319)
chr1 (198-272)||(17445405-17445479)
chr1 (21-85)||(9770462-9770526)
chr1 (89-186)||(41972362-41972458)
[»] scaffold2142 (1 HSPs)
scaffold2142 (83-273)||(499-689)
[»] chr8 (13 HSPs)
chr8 (86-273)||(39914495-39914681)
chr8 (89-273)||(29728386-29728570)
chr8 (82-273)||(3648794-3648985)
chr8 (90-262)||(15838270-15838441)
chr8 (114-273)||(16788025-16788184)
chr8 (85-261)||(34136837-34137013)
chr8 (116-261)||(4404018-4404163)
chr8 (114-273)||(23402116-23402275)
chr8 (106-273)||(36408551-36408718)
chr8 (130-273)||(9877244-9877387)
chr8 (130-181)||(40470585-40470636)
chr8 (198-273)||(42231029-42231104)
chr8 (133-186)||(3435296-3435349)
[»] scaffold0041 (1 HSPs)
scaffold0041 (122-273)||(52941-53092)
[»] scaffold0502 (1 HSPs)
scaffold0502 (114-273)||(5238-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (118-273)||(31492-31647)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 86 - 272
Target Start/End: Complemental strand, 6269613 - 6269427
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  6269613 catgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 6269514  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatct 272  Q
    |           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6269513 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatct 6269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 22968631 - 22968444
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  22968631 catgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacattta 22968532  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |           |||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  22968531 caaaaagaaaaatttgggcaatctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgacagtttcatctc 22968444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 19390126 - 19390313
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||| |||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||  |||||   |||||||||||||    
T  19390126 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacattta 19390225  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19390226 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 19390313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 81 - 273
Target Start/End: Original strand, 39771765 - 39771957
Alignment:
Q  81 ccaaccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacac 180  Q
    |||| |||||||||||| ||||||| |||||  |||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||| |||||||||    
T  39771765 ccaatcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacac 39771864  T
Q  181 atttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||||            |||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||    
T  39771865 atttataaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 39771957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 89 - 273
Target Start/End: Complemental strand, 40081922 - 40081741
Alignment:
Q  89 gggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnn 188  Q
    ||||||||||||||| |||||||| | || ||||| |||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||      
T  40081922 gggcggttctaccgtatggcgact-ctggaggtcgcccgggctcgatcgataatttttgaacattagactcaac-caaaagctcattaacacatttacaa 40081825  T
Q  189 nnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
             |||||||||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| | ||||||||    
T  40081824 aaagaaaaatttgggcaatttgaaaattgtcacacgcaaatagatcttgg-attttttttagcacactattgacgggttcatctc 40081741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 261
Target Start/End: Complemental strand, 34084305 - 34084134
Alignment:
Q  90 ggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnn 189  Q
    |||||||||||||| |||||||  |||||||||| |||||||||||||||||||||||||||||| | |||||  |||||  |||||||||||||||       
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaa 34084206  T
Q  190 nnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattga 261  Q
            |||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||    
T  34084205 aagaaaaatttgggcaatatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattga 34084134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 84 - 273
Target Start/End: Complemental strand, 11018401 - 11018212
Alignment:
Q  84 accatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatt 183  Q
    |||||||||||||  |||||  ||||||| |||||||||| || | ||||||||||||||||||||||||||||||||| |||||||  ||||||||| |    
T  11018401 accatgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacact 11018302  T
Q  184 tacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||           ||||||||||||||||||| ||||||| |||||| |||  |||||||||||||||||| |||||| | ||||||||    
T  11018301 tacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctc 11018212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 114 - 273
Target Start/End: Original strand, 45182989 - 45183148
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| ||||||||||||||||||| |||||||| |||| |||||||  ||||||||| ||||           ||||||||||||||||    
T  45182989 cgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 45183088  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||||  |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  45183089 attctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctc 45183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 273
Target Start/End: Original strand, 27935187 - 27935345
Alignment:
Q  115 gggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaa 214  Q
    |||| |||| |||| ||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||           |||||||||||||||||    
T  27935187 gggcagtcgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggcaatctgaaaa 27935286  T
Q  215 ttgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    || ||| ||| |||||| ||| |||||||||||||||| ||||||||| | ||||||||    
T  27935287 ttctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctc 27935345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 45335875 - 45336025
Alignment:
Q  106 ggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggca 205  Q
    |||||| ||||||||||| |||||||| ||||||||||||| |||||||||| |||| |||||  ||||||||||||||||           | ||||||    
T  45335875 ggcgacctcgggcggtcgcccggactcaatcgataatttttacacattagacccaac-caaaaagtcattaacacatttacaaaaagaaaaatctgggca 45335973  T
Q  206 atctgaaaattgtcacacgtaaatagatcttggaattttatttagcacacta 257  Q
    ||||||||||| | ||||| |||||| |||||||||||||||||||||||||    
T  45335974 atctgaaaattcttacacgcaaataggtcttggaattttatttagcacacta 45336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 262
Target Start/End: Complemental strand, 6931049 - 6930905
Alignment:
Q  118 cggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattg 217  Q
    |||||| |||| ||||||||||||||||||| |||||||  |||| |||||||  ||||||||||||||           ||| |||||||||||||||     
T  6931049 cggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaatttaggcaatctgaaaattc 6930950  T
Q  218 tcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||||    
T  6930949 tcacacgcaaataggtctcggaattttatttagcacactattgac 6930905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 273
Target Start/End: Original strand, 33040961 - 33041120
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    ||||||||||  ||| |||||| ||||||||||||| ||||||| |||| |||||||| ||||||||| ||||           ||||  |||| |||||    
T  33040961 cgggcggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgaacaatttgaaa 33041060  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||||| |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  33041061 attttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 6503756 - 6503581
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||  |||||  ||||||  |||||||||| |||| |||||||||| ||||||||| |||||||||||| |||||||  |||| |||| |||    
T  6503756 catgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacactta 6503657  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattga 261  Q
    |           |||  |||||||||||||| ||||| | |||||| ||| ||| ||||||||||||||| |||||    
T  6503656 caaaaagaaaaatttaagcaatctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattga 6503581  T

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Target: chr3; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 257
Target Start/End: Complemental strand, 19565660 - 19565517
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| ||||  || |||||||||||||||||||||||| ||||  ||||   |||||||||||||||           ||||| ||||||||||    
T  19565660 cgggcggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaatttggacaatctgaaa 19565561  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacacta 257  Q
    ||| | ||||| |||||| ||| |||||||||||||||||||||    
T  19565560 attcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 22922215 - 22922262
Alignment:
Q  226 aaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||    
T  22922215 aaatagatcttggaattttatttaacacactattgacgggttcatctc 22922262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 35514354 - 35514429
Alignment:
Q  198 tttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||||| |||| |||||||| |||| || |||||| ||| |||||||||||| ||||||||||||| | ||||||||    
T  35514354 tttggacaatatgaaaattctcactcgcaaataggtctaggaattttattttgcacactattgacgggttcatctc 35514429  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 5135293 - 5135349
Alignment:
Q  130 ctcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    |||||||||| ||||||| ||||||||| ||||  ||||||||||||||||| ||||    
T  5135293 ctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttac 5135349  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 22922141 - 22922213
Alignment:
Q  90 ggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaac 162  Q
    |||||||| ||||| ||||||   ||||||||||  ||| |||||||||| |||||||||||||| |||||||    
T  22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttgcacattaaactcaac 22922213  T

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Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 85 - 273
Target Start/End: Complemental strand, 36293809 - 36293621
Alignment:
Q  85 ccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattt 184  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  36293809 ccatgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacattt 36293710  T
Q  185 acnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  36293709 acaaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatttacagtttcatctc 36293621  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 81 - 273
Target Start/End: Complemental strand, 26283510 - 26283318
Alignment:
Q  81 ccaaccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacac 180  Q
    |||| |||||||||||| ||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  26283510 ccaaacatgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacac 26283411  T
Q  181 atttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||||            |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  26283410 atttataaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 26283318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 39434676 - 39434863
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    ||||||||||||||||||||||||||   ||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  39434676 catgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacattta 39434775  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |           ||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  39434776 caaaatgaaaaatttgggcaatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgacagtttcatctc 39434863  T

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Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 89 - 262
Target Start/End: Original strand, 10033910 - 10034083
Alignment:
Q  89 gggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnn 188  Q
    ||||||||||||||| |||||||  ||| || ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||      
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 10034009  T
Q  189 nnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
             ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  10034010 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgac 10034083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 89 - 262
Target Start/End: Original strand, 13817960 - 13818133
Alignment:
Q  89 gggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnn 188  Q
    ||||||||||||||| |||||||  ||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||      
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 13818059  T
Q  189 nnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
             ||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  13818060 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgac 13818133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 85 - 262
Target Start/End: Complemental strand, 39657694 - 39657517
Alignment:
Q  85 ccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattt 184  Q
    ||||||||||||||||  | |||||||  | | ||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  39657694 ccatgggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacattt 39657595  T
Q  185 acnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    ||           ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  39657594 acaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgac 39657517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 125 - 273
Target Start/End: Original strand, 16155016 - 16155164
Alignment:
Q  125 ccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacg 224  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||            ||| |||||||||||||||||||||||    
T  16155016 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacacg 16155115  T
Q  225 taaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
     |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  16155116 caaataggtcttggaattttatttagcacactattgacagattcatctc 16155164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 114 - 273
Target Start/End: Complemental strand, 12279019 - 12278860
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||| |||| ||  ||||||||| ||||           ||||||||||||||||    
T  12279019 cgggcggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 12278920  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  12278919 attctcacacgcaaataggtctcggaattttatttagcacactattgacaggttcatctc 12278860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 272
Target Start/End: Complemental strand, 1776559 - 1776377
Alignment:
Q  90 ggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnn 189  Q
    |||||||||||||| || ||||  |||||||||| |||| |||||||||||||||||| |||||| | |||||  |||||  |||||||||||||||       
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaa 1776460  T
Q  190 nnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatct 272  Q
            |||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||    
T  1776459 aagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacaggttcatct 1776377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 16334013 - 16333887
Alignment:
Q  136 cgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatct 235  Q
    ||||||||||||||||||||| ||||| ||||||| |||||||||||||||           ||||||||||||||||||||||||||| |||||| |||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtct 16333914  T
Q  236 tggaattttatttagcacactattgac 262  Q
    |||||||||||||||||||||||||||    
T  16333913 tggaattttatttagcacactattgac 16333887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 93 - 273
Target Start/End: Original strand, 19985926 - 19986106
Alignment:
Q  93 ggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnn 192  Q
    |||| |||||| || |||| |||||||||||||||  ||||||||||||||||||||||||||| ||||| ||||||  ||||| |||||||||          
T  19985926 ggttttaccgtatgacgacctcgggcggtcgtccgagctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaag 19986025  T
Q  193 nnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
         |||||| ||||| |||||| ||||||| |||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  19986026 aaaaatttgggtaatctaaaaattatcacacgcaaataggtcttgaaattttatttaacacactattgacaggttcatctc 19986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 257
Target Start/End: Complemental strand, 3155818 - 3155647
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||| ||| ||||||   ||||||||||  ||| ||||||| |||||||||||||||| ||||||||  |||||  ||||||||||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacattta 3155719  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacacta 257  Q
                ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3155718 taaaaagaaaaatttggacaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 114 - 273
Target Start/End: Complemental strand, 17332710 - 17332551
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||| ||| |||| |||||||||||||||||||| ||||||| |||| |||||||  ||||||||| ||||           ||||||||||||||||    
T  17332710 cgggcgttcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 17332611  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||||| |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  17332610 attttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 17332551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 273
Target Start/End: Original strand, 33430335 - 33430488
Alignment:
Q  120 gtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtc 219  Q
    |||| |||| ||||||||||||||||||| |||||||| |||| |||||||  ||||||||| ||||           ||||||||||||||||||| ||    
T  33430335 gtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctc 33430434  T
Q  220 acacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||||| |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  33430435 acacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 273
Target Start/End: Original strand, 31680375 - 31680534
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| ||||||||||||||||| | |||||||| |||| |||||||  ||||||||| ||||           ||||||||||||||||    
T  31680375 cgggcggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 31680474  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||| | |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  31680475 attctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 31680534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 273
Target Start/End: Original strand, 37254651 - 37254808
Alignment:
Q  116 ggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaat 215  Q
    |||||||| || | |||||||||||||||||||||||||||| |||| ||||||   ||||||||| ||||           ||||||||||||||||||    
T  37254651 ggcggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaat 37254750  T
Q  216 tgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    | ||||||| |||||| ||| |||||||||||||||||| ||||||| | ||||||||    
T  37254751 tctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctc 37254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 261
Target Start/End: Complemental strand, 31501864 - 31501728
Alignment:
Q  125 ccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacg 224  Q
    |||| |||||||||||||||||||||||||||| |||| |||||||  ||||||||| ||||           ||||||||||||||||||| || ||||    
T  31501864 ccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcgcacg 31501765  T
Q  225 taaatagatcttggaattttatttagcacactattga 261  Q
     |||||| ||| | |||||||||||||||||||||||    
T  31501764 caaataggtctcgaaattttatttagcacactattga 31501728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 43068894 - 43069044
Alignment:
Q  123 gtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcaca 222  Q
    |||||| ||||||| ||||||||| |||||||||| |||| ||||||  |||||||||||||||           ||||||||||||||||||| | |||    
T  43068894 gtccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttaca 43068993  T
Q  223 cgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
     |||||||  ||| |||||||||||||||||||||||| | | ||||||||    
T  43068994 tgtaaataagtctcggaattttatttagcacactattgccggattcatctc 43069044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 273
Target Start/End: Original strand, 36291373 - 36291538
Alignment:
Q  108 cgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaat 207  Q
    ||||| |||||||||||||||  |||||| |||||||||||||||||||   |||  ||||| ||||||||||||||||           ||||||||||    
T  36291373 cgactccgggcggtcgtccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaaaaagaaaaatttgggcaat 36291472  T
Q  208 ctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    || |||||| | ||||  |||||| |||  |||||||||||| |||||||||||| | ||||||||    
T  36291473 ctcaaaattattacacacaaataggtctcagaattttatttaacacactattgacgggttcatctc 36291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 28801311 - 28801367
Alignment:
Q  130 ctcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    |||||||||||||||||||||||||||  |||  ||||||| |||||||||| ||||    
T  28801311 ctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttac 28801367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 14316641 - 14316694
Alignment:
Q  89 gggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataat 142  Q
    ||||||||||||||| ||||||  ||||||||||| || | |||||||||||||    
T  14316641 gggcggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 86 - 271
Target Start/End: Complemental strand, 14777294 - 14777109
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||||| ||||   |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacattta 14777195  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatc 271  Q
    |           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14777194 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatc 14777109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 86 - 262
Target Start/End: Original strand, 5555467 - 5555643
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||| |||||||  |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  5555467 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcattta 5555566  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    |           ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  5555567 caaaaagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgac 5555643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 85 - 262
Target Start/End: Complemental strand, 3114284 - 3114107
Alignment:
Q  85 ccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattt 184  Q
    ||||||||||||||||||| ||| |||  ||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  3114284 ccatgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattt 3114185  T
Q  185 acnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    ||           ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  3114184 acaaaaagaaaaatttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgac 3114107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 8394109 - 8394281
Alignment:
Q  90 ggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnn 189  Q
    |||||||||||||| |||||||  |||||||||| |||| ||||||||||||||||||||||||| |||||||  |||||  |||||||||||||||       
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 8394208  T
Q  190 nnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8394209 aggaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 8394281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 90 - 273
Target Start/End: Original strand, 36630800 - 36630983
Alignment:
Q  90 ggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnn 189  Q
    |||||||||||||| |||||||  ||| |||||| |||| ||||||||||||||||||||||||| |||||||  |||||  |||||||||||||||       
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 36630899  T
Q  190 nnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
            ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| | ||||||||    
T  36630900 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctc 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 273
Target Start/End: Complemental strand, 34389215 - 34389056
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||| ||||           ||||||||||||||||    
T  34389215 cgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 34389116  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||||| |||||| ||| |||||||||||||||||| ||| ||| | ||||||||    
T  34389115 attctcacacgcaaataggtctcggaattttatttagcacattatcgacgggttcatctc 34389056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 273
Target Start/End: Complemental strand, 37002303 - 37002144
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| |||  ||||||   ||||||||| ||||           ||||||||||||||||    
T  37002303 cgggcggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 37002204  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||    
T  37002203 attctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 37002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 273
Target Start/End: Original strand, 35090177 - 35090335
Alignment:
Q  115 gggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaa 214  Q
    ||||||||| |||| ||||||| |||||||||||||||||||| |||| |||||||  ||||||||| ||||           |||||| ||||||||||    
T  35090177 gggcggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaa 35090276  T
Q  215 ttgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    || ||||||| |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  35090277 ttctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 35090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 273
Target Start/End: Complemental strand, 40920154 - 40920003
Alignment:
Q  122 cgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcac 221  Q
    ||||||| ||||||||||||||||||||||||||| | ||| |||||||  ||||||||||||||           ||||| ||||||||||||| ||||    
T  40920154 cgtccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcac 40920055  T
Q  222 acgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    | | |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  40920054 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 40920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 271
Target Start/End: Complemental strand, 8867890 - 8867733
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| |||||||||||||||||||| ||||||| |||  |||||||  ||||| ||||||||           ||||||||||| ||||    
T  8867890 cgggcggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaatttgggcaatcggaaa 8867791  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatc 271  Q
    ||| ||||||| |||||| ||| |||||||||||||||||||||||||| | ||||||    
T  8867790 attttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatc 8867733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 273
Target Start/End: Original strand, 26624753 - 26624913
Alignment:
Q  114 cgggcggtcgtccggactcgat-cgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaa 212  Q
    |||||||||| | || |||||| |||||||||||||| ||||||| |||  |||||| | ||||||||| ||||           |||||||||||||||    
T  26624753 cgggcggtcgcctgggctcgattcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaaaaagaaaaatttgggcaatctgaa 26624852  T
Q  213 aattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||| ||||||| |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  26624853 aattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 26624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 273
Target Start/End: Original strand, 36658200 - 36658348
Alignment:
Q  125 ccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacg 224  Q
    ||||||||||||||||||||||||||||| ||| ||||  ||||||  ||||||| | | ||           ||||||||||||||||||| |||||||    
T  36658200 ccggactcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaaatttgggcaatctgaaaattctcacacg 36658299  T
Q  225 taaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
     |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  36658300 caaataggtctcggaattttatttagcacactattgacgggttcatctc 36658348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 272
Target Start/End: Complemental strand, 38638379 - 38638237
Alignment:
Q  130 ctcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaat 229  Q
    |||||| ||||||||||||||||||||  |||| ||||||   ||||||||| ||||           ||||||||||||||||||| ||||||| ||||    
T  38638379 ctcgattgataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaat 38638280  T
Q  230 agatcttggaattttatttagcacactattgacagtttcatct 272  Q
    || ||| |||||||||||||||||||||||||| | |||||||    
T  38638279 aggtctcggaattttatttagcacactattgacgggttcatct 38638237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 273
Target Start/End: Complemental strand, 43184627 - 43184468
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    ||||||||||  ||| ||||||||||||||||| | ||| ||||| ||| |||||||  ||||||| | ||||           ||||||||||||||||    
T  43184627 cgggcggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctgaaa 43184528  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||||| |||||| |||  ||||||||||||||||||||||||| | ||||||||    
T  43184527 attctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 43184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 33685588 - 33685720
Alignment:
Q  130 ctcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaat 229  Q
    ||||||||||||||||||||||||| || |||| ||||||| |||||||||| ||||           ||||||||||||||||||| ||| ||| ||||    
T  33685588 ctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcatacgcaaat 33685687  T
Q  230 agatcttggaattttatttagcacactattgac 262  Q
    |  |||   ||||||||||||||||||||||||    
T  33685688 atgtctcataattttatttagcacactattgac 33685720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 7002817 - 7002892
Alignment:
Q  198 tttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||||| |||||| |||||| ||||||| |||||| ||  |||||||||||||||||||||||||| | ||||||||    
T  7002817 tttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 7048688 - 7048763
Alignment:
Q  198 tttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||||| |||||| |||||| ||||||| |||||| ||  |||||||||||||||||||||||||| | ||||||||    
T  7048688 tttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 41251821 - 41251634
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||||| | |||  |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41251821 catgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 41251722  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41251721 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 41251634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 17445226 - 17445041
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||||||||||| ||||||||||| |||  |||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacattta 17445129  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17445128 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 17445041  T

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Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 83 - 273
Target Start/End: Complemental strand, 6403994 - 6403804
Alignment:
Q  83 aaccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacat 182  Q
    ||||||||||||||| ||||||| |||||  |||||||||| |||| |||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  6403994 aaccatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacat 6403895  T
Q  183 ttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||            |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  6403894 ttataaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 6403804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 86 - 262
Target Start/End: Original strand, 35962695 - 35962871
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||| |||||||  | ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  35962695 catgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacattta 35962794  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    |           ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  35962795 caaaaagaaaattttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgac 35962871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 86 - 262
Target Start/End: Original strand, 42439966 - 42440142
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||| |||||||  |||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacattta 42440065  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    |           ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  42440066 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgac 42440142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 83 - 262
Target Start/End: Complemental strand, 32127331 - 32127152
Alignment:
Q  83 aaccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacat 182  Q
    ||||||||||||||||| ||| |||||||  |||||||||| |||| ||||||| ||||||||||||||||| |||| || |||||||||||||||||||    
T  32127331 aaccatgggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacat 32127232  T
Q  183 ttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    ||||           ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32127231 ttacaaaaagaaaaatttaggcaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgac 32127152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 86 - 262
Target Start/End: Original strand, 18981597 - 18981772
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||| |||||||  ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||  |||||| |||||||    
T  18981597 catgggcggttctaccgtatggcgacc-cgggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacattta 18981695  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    |           |||||||||| | |||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  18981696 caaaaagaaaaatttgggcaatttaaaaattgtcacacgcaaataggtcttggaattttatttagcacactgttgac 18981772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 273
Target Start/End: Complemental strand, 31581805 - 31581622
Alignment:
Q  90 ggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnn 189  Q
    ||||||||||| || |||||||  |||||||||| || | ||||| ||||| |||||||| |||||||||| | ||||||| |||||||||||||||       
T  31581805 ggcggttctactgtatggcgaccacgggcggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaa 31581706  T
Q  190 nnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
            ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||    
T  31581705 aagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 31581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 2958287 - 2958131
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||| |||||||  ||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataa-ttttgcacattagactcaacccaaaagcccattaacacattta 2958189  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattt 243  Q
    |           |||||| |||||||||||||||||||| |||||| |||||||||||    
T  2958188 caaagagaaaaatttgggtaatctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 85 - 262
Target Start/End: Original strand, 16405579 - 16405756
Alignment:
Q  85 ccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattt 184  Q
    ||||||||||||||||| | ||| |||   ||||||||| |||| ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  16405579 ccatgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacattt 16405678  T
Q  185 acnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    |            ||||| ||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  16405679 ataaaaagaaaaatttggacaatctgaaaattgtcacacgcaaataagtcttggaattttatttagcacactattgac 16405756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 272
Target Start/End: Original strand, 8147359 - 8147518
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||   ||||||||| ||||           ||||||||||||||||    
T  8147359 cgggcggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 8147458  T
Q  214 a-ttgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatct 272  Q
    | || ||||||| |||||||||| ||||||||||||| |||||||||||| | |||||||    
T  8147459 aattctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 273
Target Start/End: Original strand, 45418591 - 45418750
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| ||||||||||||||||||| |||||||  |||| |||||||  ||||||||| ||||           ||||||||||||||||    
T  45418591 cgggcggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 45418690  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||||| |||||| |||  ||||||||||||||||||||||||| | ||||||||    
T  45418691 attctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 45418750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 114 - 272
Target Start/End: Original strand, 771007 - 771165
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| |||||||||||| ||||||||||||||| ||||  |||||| |||||||||| ||||           ||||||||||||||||    
T  771007 cgggcggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaaa 771106  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatct 272  Q
    ||| ||||||| |||||| ||| |||| ||||||||||||| ||||||| | |||||||    
T  771107 attctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 273
Target Start/End: Complemental strand, 44084762 - 44084603
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    ||||| |||| |||| ||||||||||||||||||||||||| || |||  |||||| ||||||||||| ||||           ||||||||||||||||    
T  44084762 cgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatctgaaa 44084663  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||| ||| |||||| |||  ||||||||||||||||||||||||| | ||||||||    
T  44084662 attctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctc 44084603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 131 - 273
Target Start/End: Complemental strand, 12756979 - 12756837
Alignment:
Q  131 tcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaata 230  Q
    |||||||||||||||||| |||||||| |||| |||||||  ||||||||| ||||           |||| |||||||||||||| ||||||| |||||    
T  12756979 tcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaata 12756880  T
Q  231 gatcttggaattttatttagcacactattgacagtttcatctc 273  Q
      ||| |||||||||||||||||||||||||| | ||||||||    
T  12756879 agtctcggaattttatttagcacactattgacgggttcatctc 12756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 262
Target Start/End: Original strand, 2285845 - 2286018
Alignment:
Q  89 gggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnn 188  Q
    ||||||||||||||  ||||||  |||| ||||| | | |  |||||||||||||||||||||||| |  ||||  |||||   ||||||||||||||      
T  2285845 gggcggttctaccggatggcgatctcggacggtcattcaggttcgatcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacga 2285944  T
Q  189 nnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
             |||| |||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||    
T  2285945 aaggaaaaatttgagcaatctgaaaattgtcacacgcaaataggttttggaattttatttagcacactattgac 2286018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 8059472 - 8059344
Alignment:
Q  134 atcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagat 233  Q
    ||||||||||||||||||||||| ||||| |||||||  ||||||||| ||||           ||||| |||| |||||||| ||||||  |||| | |    
T  8059472 atcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaatttggccaatttgaaaattctcacacacaaatcggt 8059373  T
Q  234 cttggaattttatttagcacactattgac 262  Q
    || ||||||||||||||||||| ||||||    
T  8059372 ctcggaattttatttagcacacaattgac 8059344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 7072710 - 7072644
Alignment:
Q  115 gggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacaca 181  Q
    ||||||||| |||| |||||||||||||||||  |||||| ||||||| ||||||| ||||||||||    
T  7072710 gggcggtcgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacaca 7072644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 4555370 - 4555298
Alignment:
Q  113 tcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    ||||||||||| | |||||||||||||||||||||||||| | || |||| ||||||||| |||||||| ||||    
T  4555370 tcgggcggtcg-ctggactcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttac 4555298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 84 - 273
Target Start/End: Original strand, 17820 - 18009
Alignment:
Q  84 accatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatt 183  Q
    ||||||||||||||||||||||||||||  || ||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  17820 accatgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatt 17919  T
Q  184 tacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||           ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  17920 tacaaaaagaaaaatttgggcaatctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacactattgacagtttcatctc 18009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 20129290 - 20129477
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||| ||||||| |||||  |||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  20129290 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 20129389  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |           |||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  20129390 caaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgacagtttcatctc 20129477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 13012164 - 13012355
Alignment:
Q  82 caaccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacaca 181  Q
    |||||||||||||||| ||||||| |||||  |||||||||| |||| ||||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  13012164 caaccatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacaca 13012263  T
Q  182 tttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||||            |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13012264 tttataaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 13012355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 47500753 - 47500940
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||| ||||||| |||||  |||||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 47500852  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
                |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  47500853 tgaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 47500940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 26439466 - 26439279
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||| ||||||| |||||  |||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  26439466 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 26439367  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
                |||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||    
T  26439366 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 26439279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 34407471 - 34407284
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||| ||||||| |||||  |||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  34407471 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 34407372  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
                |||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||    
T  34407371 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 34407284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 25930688 - 25930875
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||| |||||||   ||||||||| |||| ||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  25930688 catgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacattta 25930787  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |           |||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||    
T  25930788 caaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 25930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 43355884 - 43356071
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||| ||||||| |||||  | ||| |||| |||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  43355884 catgggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacattta 43355983  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
                |||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||    
T  43355984 taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 43356071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 86 - 262
Target Start/End: Complemental strand, 29319892 - 29319716
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||| ||| |||  | ||||||||||| | ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  29319892 catgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacattta 29319793  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    |           |||| |||||||||||||||||||||  |||||  ||||||||||||||||||||||||||||||    
T  29319792 caaaaagaaaaatttgagcaatctgaaaattgtcacacacaaataagtcttggaattttatttagcacactattgac 29319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 90 - 273
Target Start/End: Complemental strand, 36382528 - 36382346
Alignment:
Q  90 ggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnn 189  Q
    |||||||||||||| |||||||  |||||||||| |||| ||||||| ||||||||||||||||| |||||||  |||||  |||||||||||||||       
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 36382429  T
Q  190 nnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
            ||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||    
T  36382428 agaaaaa-tttggacaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 36382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 89 - 262
Target Start/End: Original strand, 40528996 - 40529171
Alignment:
Q  89 gggcggttctaccgtgtggcgacttcgggcg--gtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    ||||||||||||||| |||||||   |||||  ||||||||||||||||||||||||||||||||||| |||||||  |||| |||||||||||||||||    
T  40528996 gggcggttctaccgtatggcgaccctgggcgaggtcgtccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttac 40529095  T
Q  187 nnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
               ||||| |||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||||    
T  40529096 aaaaagaaaaatttggacaatttgaaaattgtcacatgcaaataggtcttggaattttatttagcacactattgac 40529171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 114 - 273
Target Start/End: Complemental strand, 30216901 - 30216742
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||| ||||           ||||||||||||||||    
T  30216901 cgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 30216802  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||| | |||||||||| |||||||||||||||||||||||||| | ||||||||    
T  30216801 attctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctc 30216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 89 - 261
Target Start/End: Complemental strand, 17511417 - 17511245
Alignment:
Q  89 gggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnn 188  Q
    ||||||||||||||| |||||||  | |||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||      
T  17511417 gggcggttctaccgtatggcgacc-ctggcggtcgcccagactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaa 17511319  T
Q  189 nnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttgg-aattttatttagcacactattga 261  Q
             |||||||||| |||||||||| ||||| |||||| |||||| |||||||||||||||| ||||||    
T  17511318 aaagaaaaatttgggcaatttgaaaattgttacacgcaaataggtcttggaaattttatttagcacattattga 17511245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 83 - 261
Target Start/End: Complemental strand, 43143774 - 43143596
Alignment:
Q  83 aaccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacat 182  Q
    ||||||||||||||  |||||  | ||||  |||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||     
T  43143774 aaccatgggcggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacac 43143675  T
Q  183 ttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattga 261  Q
    ||||           ||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||||||| |||||    
T  43143674 ttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 43143596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 42333935 - 42333788
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||  ||||||||| ||||           ||||||||||||||||    
T  42333935 cgggcggtcgtccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 42333836  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattga 261  Q
    ||| ||||||| |||||| ||| ||||||||||||||||||| |||||    
T  42333835 attctcacacgcaaataggtctcggaattttatttagcacacaattga 42333788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 262
Target Start/End: Complemental strand, 3293055 - 3292907
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| ||||||||||||||||||| |||||||| |||| |||||||  ||||||||| ||||           ||||||||||||||||    
T  3293055 cgggcggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 3292956  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    ||| ||||||| |||||| ||| ||||||||||||||||||||||||||    
T  3292955 attctcacacgcaaataggtctcggaattttatttagcacactattgac 3292907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 118 - 273
Target Start/End: Complemental strand, 29996138 - 29995983
Alignment:
Q  118 cggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattg 217  Q
    |||||||||||||||||||||||||||||| ||||||||||||||  |||||  |||||||||||||||           |||||||||||||||||||     
T  29996138 cggtcgtccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaatttgggcaatctgaaaattc 29996039  T
Q  218 tcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |  |||| |||||| ||| ||||||||||| |||||||||||||| | ||||||||    
T  29996038 ttgcacgcaaatagttctcggaattttattaagcacactattgacggattcatctc 29995983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 273
Target Start/End: Original strand, 48989330 - 48989495
Alignment:
Q  108 cgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaat 207  Q
    ||||| |||||||||  ||||  |||||||||||||||||||||||| || |||||||||||  |||||||||| ||||           ||||||||||    
T  48989330 cgactccgggcggtcaaccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaatttgggcaat 48989429  T
Q  208 ctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||||||||| ||| ||| |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  48989430 ctgaaaattctcatacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 48989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 271
Target Start/End: Complemental strand, 50205236 - 50205079
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||  |||||||||||||||||||||||||||  |||| |||||||  ||||||||| ||||            |||| ||||||||||    
T  50205236 cgggcggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaaaaagaaaaaattggacaatctgaaa 50205137  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatc 271  Q
    ||| ||||||| |||||| |||||||||||||||||||||||||||||| | ||||||    
T  50205136 attctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 50205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 262
Target Start/End: Complemental strand, 6690394 - 6690246
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| ||||||||||||||||||| |||||||| |||| |||||||  ||||||||| ||||           ||||||||| ||||||    
T  6690394 cgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaaactgaaa 6690295  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    ||| ||||||| |||||| ||| | ||||||||||||||||||||||||    
T  6690294 attctcacacgcaaataggtctcgaaattttatttagcacactattgac 6690246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 6235612 - 6235687
Alignment:
Q  198 tttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||    
T  6235612 tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 6235687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 255
Target Start/End: Complemental strand, 10353041 - 10352902
Alignment:
Q  116 ggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaat 215  Q
    |||||||| |||| ||| |||||||||||||||||||||||| ||||  |||||  |||||||||||||||           ||||||||||||||||||    
T  10353041 ggcggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggcaatctgaaaat 10352942  T
Q  216 tgtcacacgtaaatagatcttggaattttatttagcacac 255  Q
    | | ||||| |||||| ||| |||||||||||||||||||    
T  10352941 tcttacacgcaaataggtctcggaattttatttagcacac 10352902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 273
Target Start/End: Original strand, 44156681 - 44156818
Alignment:
Q  136 cgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatct 235  Q
    |||||||||||||||||||||| |||| |||||||  ||||||||| ||||           ||||| ||||||||||||| || |||| |||||| |||    
T  44156681 cgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaatctgaaaattctctcacgcaaataggtct 44156780  T
Q  236 tggaattttatttagcacactattgacagtttcatctc 273  Q
     |||||||||||||||||||||||||| | ||||||||    
T  44156781 cggaattttatttagcacactattgacgggttcatctc 44156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 30077797 - 30077647
Alignment:
Q  107 gcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaa 206  Q
    ||||| ||||||||||| || | ||| |||||||| ||||||||||||||| ||||  ||||| ||||||||||||||||           ||||| |||    
T  30077797 gcgacctcgggcggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaatttggacaa 30077698  T
Q  207 tctgaaaattgtcacacgtaaatagatcttggaattttatttagcacacta 257  Q
    |||||||||| | ||||  |||||| ||||| |||||||||||||||||||    
T  30077697 tctgaaaatttttacacacaaataggtcttgaaattttatttagcacacta 30077647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 36234753 - 36234817
Alignment:
Q  21 catagacagcttgtgcaattgcgcacctgaacaaacttttcgtaacttcccaaattactcccaac 85  Q
    ||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||    
T  36234753 catagacagcttgtgcattagcgcacccgaacaaacttttcgcaacttcccaaattactcccaac 36234817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 260
Target Start/End: Original strand, 26448053 - 26448206
Alignment:
Q  106 ggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggca 205  Q
    ||||||| || ||| |||||||||||||||||||||||||||||||||| |   ||| ||||||  |||||||||| ||||           ||||||||    
T  26448053 ggcgactccgtgcgatcgtccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttac-aaaaaaaaaatttgggca 26448151  T
Q  206 atctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattg 260  Q
    ||||||||||| ||| ||  |||||| | | ||||||||||||||||||||||||    
T  26448152 atctgaaaattctcatacacaaataggtttcggaattttatttagcacactattg 26448206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 48129978 - 48130046
Alignment:
Q  118 cggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    |||||| |||| |||||||||||||||||||| ||||||| |||| |||||||||||||||||| ||||    
T  48129978 cggtcgaccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttac 48130046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 27363338 - 27363441
Alignment:
Q  83 aaccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacat 182  Q
    ||||| |||||||| |||||| ||||||| ||||||||||| |||| |||||||||   |||||||| ||||| | |||| ||||||| ||||||||||     
T  27363338 aaccaggggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgatcgaatttttttgcatattaggcccaacccaaaagcccattaacacac 27363437  T
Q  183 ttac 186  Q
    ||||    
T  27363438 ttac 27363441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 261
Target Start/End: Complemental strand, 28877390 - 28877262
Alignment:
Q  133 gatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaataga 232  Q
    |||||||||||||||||||||||| |||||  ||||||| ||||||||  |||            |||||| ||||| |||||| ||||||| ||||||     
T  28877390 gatcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataaaaagaaaaatttgggaaatctaaaaattctcacacgcaaatagg 28877291  T
Q  233 tcttggaattttatttagcacactattga 261  Q
    ||| |||||||||||||||||||||||||    
T  28877290 tctcggaattttatttagcacactattga 28877262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 261
Target Start/End: Original strand, 35545977 - 35546108
Alignment:
Q  130 ctcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaat 229  Q
    ||||||||| ||||||||| ||| |||| |||| |||||||  ||||||||| ||||           ||||||||||||||||||| ||||||| ||||    
T  35545977 ctcgatcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcacacgcaaat 35546076  T
Q  230 agatcttggaattttatttagcacactattga 261  Q
     | |||  ||||||||||||||||||||||||    
T  35546077 gggtctctgaattttatttagcacactattga 35546108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 13392956 - 13392893
Alignment:
Q  198 tttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattga 261  Q
    |||||||||||| |||||| ||||||| |||||| ||| | |||||||||||||||||||||||    
T  13392956 tttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 13396095 - 13396032
Alignment:
Q  198 tttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattga 261  Q
    |||||||||||| |||||| ||||||| |||||| ||| | |||||||||||||||||||||||    
T  13396095 tttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 45194195 - 45194256
Alignment:
Q  125 ccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    |||||||||||| ||||||||||||||||| ||||||| ||||||  |||||||||| ||||    
T  45194195 ccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttac 45194256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 30109968 - 30110036
Alignment:
Q  118 cggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    |||||| ||||||||||||||||||||||||||||||||| |||  | ||||  |||||||||| ||||    
T  30109968 cggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttac 30110036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 36216817 - 36216881
Alignment:
Q  21 catagacagcttgtgcaattgcgcacctgaacaaacttttcgtaacttcccaaattactcccaac 85  Q
    ||||| ||||||||||| ||| ||| |||||||||||||| | |||||||||||||| |||||||    
T  36216817 cataggcagcttgtgcatttgtgcaactgaacaaactttttgcaacttcccaaattattcccaac 36216881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 1817809 - 1817884
Alignment:
Q  198 tttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||||||||||| |||||| | ||||| |||||| ||| ||||||||||||| |||||||||| | | ||||||||    
T  1817809 tttgggcaatctaaaaattcttacacgcaaataggtctcggaattttatttaacacactattgtcggattcatctc 1817884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 480644 - 480457
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||| ||||||| |||||  |||||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  480644 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 480545  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
                |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  480544 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 480457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 398597 - 398784
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||| ||||||| |||||  |||||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 398696  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
                |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  398697 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 398784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 86 - 262
Target Start/End: Complemental strand, 34948945 - 34948769
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||| |||||||  | |||||||| || | ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  34948945 catgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacattta 34948846  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    |           ||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  34948845 caaaaagaaaaatttgggcaatctgaaaattgtcacacacaaatagatcttgaaattttatttagcacactattgac 34948769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 262
Target Start/End: Original strand, 13837801 - 13837977
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||| |||||||  |||||| |||  |||  ||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||    
T  13837801 catgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacattta 13837900  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    |           ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  13837901 caaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgac 13837977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 273
Target Start/End: Original strand, 18339114 - 18339273
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| ||||||| |||||||||||||||||||| |||   ||||||  ||||||||| ||||           ||||||||||||||||    
T  18339114 cgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaa 18339213  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||| | |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  18339214 attctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 18339273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 273
Target Start/End: Original strand, 28996738 - 28996897
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||  ||||||||||||||||||| |||||||| ||||  |||||   ||||||||| ||||           ||||||||||||||||    
T  28996738 cgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 28996837  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||||| |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  28996838 attctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 28996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 257
Target Start/End: Original strand, 29743291 - 29743434
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||| | |||| ||| |||||||||||||||||||||||| ||||  ||||| ||||||||||||||||           ||||||||||||||||    
T  29743291 cgggcggttgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaatttgggcaatctgaaa 29743390  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacacta 257  Q
    ||| | ||||| |||||| ||| |||||||||||||||||||||    
T  29743391 attcttacacgcaaataggtctcggaattttatttagcacacta 29743434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 33229484 - 33229336
Alignment:
Q  125 ccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacg 224  Q
    |||| |||||||||| ||||||| ||||||||| |||| ||||||  ||||||||||||| |           ||||||||||||||||||| | |||||    
T  33229484 ccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaatctgaaaattcttacacg 33229385  T
Q  225 taaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||||||  ||| || ||||||||||||||||||||| | | ||||||||    
T  33229384 taaataagtctcgggattttatttagcacactattgccggattcatctc 33229336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 31028512 - 31028451
Alignment:
Q  125 ccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    ||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||    
T  31028512 ccggactcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttac 31028451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 25467195 - 25467132
Alignment:
Q  22 atagacagcttgtgcaattgcgcacctgaacaaacttttcgtaacttcccaaattactcccaac 85  Q
    |||| ||||||||||| ||| ||| |||||||||| ||| | ||||||||||||||||||||||    
T  25467195 ataggcagcttgtgcatttgtgcaactgaacaaacattttgcaacttcccaaattactcccaac 25467132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 29135114 - 29135149
Alignment:
Q  21 catagacagcttgtgcaattgcgcacctgaacaaac 56  Q
    ||||||||||||||||||||||||||||||||||||    
T  29135114 catagacagcttgtgcaattgcgcacctgaacaaac 29135149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 24697965 - 24697904
Alignment:
Q  125 ccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    |||| ||| ||||||||||||| |||||||| | |||| ||||||| |||||||||| ||||    
T  24697965 ccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttac 24697904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 26144235 - 26144422
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||| ||||||| |||||  |||||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  26144235 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 26144334  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
                |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  26144335 taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 26144422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 86 - 262
Target Start/End: Original strand, 7433425 - 7433601
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||||||||| |||| ||  |||||||||| |||  ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacattta 7433524  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    |           |||||||||||| |||||||||||||  |||||| ||||| ||||||||||||||||||||||||    
T  7433525 caaaaagaaaattttgggcaatctaaaaattgtcacacacaaataggtcttgaaattttatttagcacactattgac 7433601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 273
Target Start/End: Complemental strand, 32982236 - 32982056
Alignment:
Q  93 ggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnn 192  Q
    ||||||||||| |||||||  ||||||||||  ||| | |||||||||||||||||||||||||| ||||  |||||| |||||||| ||||||          
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaag 32982137  T
Q  193 nnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
         ||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  32982136 aaaaatttggacaatctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgacagattcatctc 32982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 89 - 273
Target Start/End: Complemental strand, 42311125 - 42310941
Alignment:
Q  89 gggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnn 188  Q
    ||||||||||||||| |||||||  | | || ||| |||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||      
T  42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaa 42311026  T
Q  189 nnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
             ||||||||||||||||||||||||||| |||||  ||||| |||||||||||| || |||||||| | ||||||||    
T  42311025 aaagaaaaatttgggcaatctgaaaattgtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctc 42310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 273
Target Start/End: Original strand, 3829009 - 3829150
Alignment:
Q  131 tcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaata 230  Q
    |||||||||||||||||||||||| || |||| |||||| ||||||||||| ||||           ||||||||||||||||||| ||| ||| |||||    
T  3829009 tcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattttcatacgcaaata 3829108  T
Q  231 gatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    | ||| |||||||||||||||||||||||||| | ||||||||    
T  3829109 ggtct-ggaattttatttagcacactattgacgggttcatctc 3829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 262
Target Start/End: Original strand, 35907532 - 35907708
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    |||||||||||  ||||   |||||| ||||||||||| |||| || ||||||||||||||||||||||||| |||| |||||||  ||||  ||| |||    
T  35907532 catgggcggtttcaccgcccggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacactta 35907631  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
    |           |||||| |||||||||||| ||||||| |||||| ||| |||||||||||||||||| |||||||    
T  35907632 caaaaagaaaattttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgac 35907708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 273
Target Start/End: Complemental strand, 321544 - 321377
Alignment:
Q  106 ggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggca 205  Q
    ||||| ||||||||||||||||| ||||||||||||||||||  |||||||  |||| ||||||  |||||||||| ||||           ||||||||    
T  321544 ggcgatttcgggcggtcgtccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaagaaaaatttgggca 321445  T
Q  206 atctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||||||||||| ||| | | |||||| ||| ||||||||||||| |||| ||||||| | ||||||||    
T  321444 atctgaaaattctcatatgcaaataggtctcggaattttatttaacacattattgacgggttcatctc 321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 23313218 - 23313319
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataattt-ttgcacattagactcaactcaaaagctcattaacacattt 184  Q
    |||||||||||||||||| ||||||  ||||||||| | |||| |||||| ||| |||| ||||||||||||||||||  ||||| ||||||||||||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacattt 23313317  T
Q  185 ac 186  Q
    ||    
T  23313318 ac 23313319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 17445405 - 17445479
Alignment:
Q  198 tttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatct 272  Q
    ||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||| ||||||| | |||||||    
T  17445405 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 9770462 - 9770526
Alignment:
Q  21 catagacagcttgtgcaattgcgcacctgaacaaacttttcgtaacttcccaaattactcccaac 85  Q
    ||||| ||||||||||| ||| ||| || ||||||||||||| ||||||||||||||||||||||    
T  9770462 cataggcagcttgtgcatttgtgcaactcaacaaacttttcgcaacttcccaaattactcccaac 9770526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 41972458 - 41972362
Alignment:
Q  89 gggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    ||||||||| |||||   |||||  |||||||||| | || |||||||||||||||||||||||||||  ||||  ||||||  ||||||||| ||||    
T  41972458 gggcggttccaccgtccagcgaccccgggcggtcgcctgg-ctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttac 41972362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 83 - 273
Target Start/End: Original strand, 499 - 689
Alignment:
Q  83 aaccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacat 182  Q
    ||||||||||||||| ||||||| ||||   |||||||||| |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  499 aaccatgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacat 598  T
Q  183 ttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||            |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  599 ttataaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 39914495 - 39914681
Alignment:
Q  86 catgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattta 185  Q
    ||||| |||||| ||||||| |||||  |||||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  39914495 catggacggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacattta 39914594  T
Q  186 cnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
                |||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  39914595 -taaaaaaaaaatttgggcaatttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgacagtttcatctc 39914681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 273
Target Start/End: Complemental strand, 29728570 - 29728386
Alignment:
Q  89 gggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnn 188  Q
    ||||||||||||||| |||||||  ||| |||||| |||  |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||      
T  29728570 gggcggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaa 29728471  T
Q  189 nnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
             ||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||| | ||||||||    
T  29728470 aaagaaaaatttgggcaatctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctc 29728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 3648985 - 3648794
Alignment:
Q  82 caaccatgggcggttctaccgtgtggcgacttcggg-cggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacac 180  Q
    |||||| ||||||||||||||| |||||| | |||| | |||| |||| ||||||||||||||||| ||||||||||||||| ||||||| |||||||||    
T  3648985 caaccaggggcggttctaccgtatggcga-tccgggacagtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacac 3648887  T
Q  181 atttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||||||           ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||||| | ||||||||    
T  3648886 atttacaaaaagaaaattttgggcaatctgaaaattgtcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctc 3648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 15838270 - 15838441
Alignment:
Q  90 ggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnn 189  Q
    |||||||||||||| |||||||  |||||||||  |||| |||||| |||||||||||||||||| |||||||  |||||  |||||||||||||||       
T  15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaa 15838369  T
Q  190 nnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgac 262  Q
            ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  15838370 agaaaaa-tttgggcaatctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgac 15838441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 273
Target Start/End: Complemental strand, 16788184 - 16788025
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||  ||||||||| ||||           |||||||||||| |||    
T  16788184 cgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatcttaaa 16788085  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    | | ||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||    
T  16788084 actctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 16788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 261
Target Start/End: Complemental strand, 34137013 - 34136837
Alignment:
Q  85 ccatgggcggttctaccgtgtggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacattt 184  Q
    ||||||| ||||  ||||| |||||||  || ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||   ||||||||| ||    
T  34137013 ccatgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacactt 34136914  T
Q  185 acnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattga 261  Q
    ||           ||||||||||||||||||| ||||||| |||||| ||| | ||||||||||||||||| |||||    
T  34136913 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattga 34136837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 4404018 - 4404163
Alignment:
Q  116 ggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaat 215  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||  ||||||| | ||||           |||||||||||| |||||    
T  4404018 ggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctaaaaat 4404117  T
Q  216 tgtcacacgtaaatagatcttggaattttatttagcacactattga 261  Q
    | ||||||| |||||| ||| ||||||||||||||||||| |||||    
T  4404118 tctcacacgcaaataggtctcggaattttatttagcacacaattga 4404163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 273
Target Start/End: Original strand, 23402116 - 23402275
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| ||||||||||||| |||||| ||||||| |||| |||||||  ||||||||| ||||           ||||||||||||||||    
T  23402116 cgggcggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaa 23402215  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||||| |||||| ||| | ||||||||||| |||||||||||| | ||||||||    
T  23402216 attctcacacgcaaataggtctcgaaattttatttaacacactattgactggttcatctc 23402275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 273
Target Start/End: Original strand, 36408551 - 36408718
Alignment:
Q  106 ggcgacttcgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggca 205  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||||||  |||| ||||||  |||||||||||||||           ||| ||||    
T  36408551 ggcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaatttttggca 36408650  T
Q  206 atctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    || |||||||| | |||||  ||||| |||  |||||||||||| |||||||||| | | ||||||||    
T  36408651 atttgaaaattcttacacgctaataggtctcagaattttatttaacacactattgccggattcatctc 36408718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 273
Target Start/End: Original strand, 9877244 - 9877387
Alignment:
Q  130 ctcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcacacgtaaat 229  Q
    |||||| |||||||||||||||||||||  ||| ||||||   ||||||||| ||||           ||||||||||||||||||| ||||| | ||||    
T  9877244 ctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaaat 9877343  T
Q  230 agatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    || ||| | |||||||||||||||||||||| ||  ||||||||    
T  9877344 aggtctcgaaattttatttagcacactattgtcaaattcatctc 9877387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 40470636 - 40470585
Alignment:
Q  130 ctcgatcgataatttttgcacattagactcaactcaaaagctcattaacaca 181  Q
    |||||||||||||||||||||||||||| ||| |||||||  ||||||||||    
T  40470636 ctcgatcgataatttttgcacattagacccaaatcaaaagtccattaacaca 40470585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 42231029 - 42231104
Alignment:
Q  198 tttgggcaatctgaaaattgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||||||||| |||||||| ||| | | |||||| |||  ||||||||||||||||||||||||| | ||||||||    
T  42231029 tttgggcaatttgaaaattctcatatgcaaataggtctcagaattttatttagcacactattgacggattcatctc 42231104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 3435296 - 3435349
Alignment:
Q  133 gatcgataatttttgcacattagactcaactcaaaagctcattaacacatttac 186  Q
    ||||||||||||||||||||||||| |||| ||||| | |||||||||| ||||    
T  3435296 gatcgataatttttgcacattagacccaacccaaaaacccattaacacacttac 3435349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 52941 - 53092
Alignment:
Q  122 cgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattgtcac 221  Q
    ||||||| ||||||||||||||||||||||||||| | ||| |||||||  ||||||||||||||           ||||| ||||||||||||| ||||    
T  52941 cgtccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcac 53040  T
Q  222 acgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    | | |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  53041 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 53092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 273
Target Start/End: Original strand, 5238 - 5397
Alignment:
Q  114 cgggcggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaa 213  Q
    |||||||||| |||| ||||||| |||||||||||||||||||| |||   ||||||  ||||||||| ||||           ||||||||||||||||    
T  5238 cgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaa 5337  T
Q  214 attgtcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    ||| ||||| | |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  5338 attctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 5397  T

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Target: scaffold0154 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 118 - 273
Target Start/End: Original strand, 31492 - 31647
Alignment:
Q  118 cggtcgtccggactcgatcgataatttttgcacattagactcaactcaaaagctcattaacacatttacnnnnnnnnnnntttgggcaatctgaaaattg 217  Q
    |||||| |||| |||||||||||||||||||||| ||||| |||| ||||||| |||||||||| ||||           ||||| |||||||||||||     
T  31492 cggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaatttggacaatctgaaaattc 31591  T
Q  218 tcacacgtaaatagatcttggaattttatttagcacactattgacagtttcatctc 273  Q
    |||| || |||||| ||| | |||||||||| ||||||||||||||| ||||||||    
T  31592 tcactcgcaaataggtctagtaattttattttgcacactattgacaggttcatctc 31647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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