View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13697_low_14 (Length: 244)
Name: NF13697_low_14
Description: NF13697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13697_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 16497192 - 16497383
Alignment:
| Q |
37 |
aaacccattaactccaaaaagaactttctatcaccaaaatcaaacggtgatgtattcccatggttaaaattcatgccagtagcacccgaataccaaccca |
136 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16497192 |
aaacccatcaactccaaaaagaactttctatcaccaaaatcaaacggtgatgtattcccatggttaaaatccatgccagtagcacccgaataccaaccca |
16497291 |
T |
|
| Q |
137 |
ctccagctgaattcgaagatccaatcgaatacattttcaagatcaaaaaccaagctttcaaatttgaaatctgcaaaatcatccctcctttt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16497292 |
ctccagctgaattcgaagatccaatcgaatacattttcaagatcaaaaaccaagcttccaaatttgaaatctgcaaaatcatccctcctttt |
16497383 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 40778754 - 40778945
Alignment:
| Q |
37 |
aaacccattaactccaaaaagaactttctatcaccaaaatcaaacggtgatgtattcccatggttaaaattcatgccagtagcacccgaataccaaccca |
136 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40778754 |
aaacccattaactccaaaaagaactatctatcaccaaaatcaaacggtgatgtattcccatggttaaaatccatgccagtagcacccgaataccaaccca |
40778853 |
T |
|
| Q |
137 |
ctccagctgaattcgaagatccaatcgaatacattttcaagatcaaaaaccaagctttcaaatttgaaatctgcaaaatcatccctcctttt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| | ||||||||||||||||||||||||| |
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| T |
40778854 |
ctccagctgaattcgaagatccaatcgaatacattttaaagatcgaaaaccaagcttccaaattcggaatctgcaaaatcatccctcctttt |
40778945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 34224531 - 34224377
Alignment:
| Q |
74 |
aatcaaacggtgatgtattcccatggttaaaattcatgccagtagcacccgaataccaacccactccagctgaattcgaagatccaatcgaatacatttt |
173 |
Q |
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|||||||||| || ||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34224531 |
aatcaaacggcgacgtattcccatggttaaaatccatgccagtagctcccgaataccgacccactccagctgaattcgaagatccaatcgcatacatttt |
34224432 |
T |
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| Q |
174 |
caagatcaaaaaccaagctttcaaatttgaaatctgcaaaatcatccctcctttt |
228 |
Q |
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||||||| ||||| |||||| |||||| | |||||||||||| |||||||||||| |
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| T |
34224431 |
caagatcgaaaacgaagcttccaaattcggaatctgcaaaattatccctcctttt |
34224377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 29657378 - 29657419
Alignment:
| Q |
37 |
aaacccattaactccaaaaagaa-ctttctatcaccaaaatc |
77 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||| |
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| T |
29657378 |
aaactcattaactccaaaaagaaactttctatcaccaaaatc |
29657419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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