View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13697_low_2 (Length: 622)
Name: NF13697_low_2
Description: NF13697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13697_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 24 - 606
Target Start/End: Complemental strand, 6657032 - 6656445
Alignment:
| Q |
24 |
ctggttttgccgaaatcacaatgggtcatcgtgtttttgctgaaaccacaccgagtcgttgtgtttttgccgaaatgaattagttcaattagcattcctt |
123 |
Q |
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| T |
6657032 |
ctggttttgccgaaatcacaatgggtcatcgtgtttttgctgaaaccacactgagtcgttgtgtttttgccgaaatgaattagttcaattagcattcctt |
6656933 |
T |
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| Q |
124 |
tcatttt--gttggtctcatataaatgaatggagatttaatgttatataataagcaatgaggccgaagccaagaaaaacacaactacaaaagggacattg |
221 |
Q |
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| T |
6656932 |
tcattttttgttggtctcatataaatgaatggagatttaatgttatataataagcaatgaggccgaagccaagaaaaacacaactacaaaagggacattg |
6656833 |
T |
|
| Q |
222 |
ttgagaagaaactctcagaaaatcag----attttattttttatttgac--------tgctaccgctattatcattgtttgtggttgagtaaaactcgat |
309 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6656832 |
ttgagaagaaactctcagaaaatcagttttttttttttttttatttgactgctacagtgctaccgctattatcattgtttatggttgagtaaaactcgat |
6656733 |
T |
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| Q |
310 |
ccgatttgttgaaccaatataactagagtttgaatatgtccagcaaataaaataggaactatgtatgggtaacctttagatgannnnnnnnnctcgtttg |
409 |
Q |
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| T |
6656732 |
ccgatttgttgaaccaatataactagagtttgaatatgtccaacaaataaaataggaactatgtatggttaacctttagatga-ttttttttctcgtttg |
6656634 |
T |
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| Q |
410 |
tatacatttttatttatttgaatataggttctatatgtaaatctgttcattacttcattataatttacattaacaaccttaaacgtataattcactgaaa |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
6656633 |
tatacatttttatttatttgaatataggttctatatgtaaatctg--------ttcattataatttacattaacaaccttaaatgtataattcattgaaa |
6656542 |
T |
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| Q |
510 |
ggatccgttagaaaatcacatgagactagcgcatatgagcagtaactggcagtccgcatttcttgataaaattgatccaagctacacgacttatatg |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6656541 |
ggatccgttagaaaatcacatgagactagcgcatatgagcagtaactggcagtctgcatttcttgataaaattgatcaaagctacacgacttatatg |
6656445 |
T |
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