View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13697_low_4 (Length: 538)
Name: NF13697_low_4
Description: NF13697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13697_low_4 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Original strand, 1628650 - 1629180
Alignment:
| Q |
19 |
tcatcggtcatgtggttccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgat--------aactgtcataaac |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1628650 |
tcataggtcatgtggttccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgataacttgataactgtcataaac |
1628749 |
T |
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| Q |
111 |
aacataattcaaaggacggaagagaaatacataagctgcggtgttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatgga |
210 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1628750 |
aacataattcaaaggacggaagcgaaatacataagttgcggtgttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatgga |
1628849 |
T |
|
| Q |
211 |
catactactgtggcgttagcaactactcattggtttggtgtgcacctcaagcgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgag |
310 |
Q |
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| T |
1628850 |
catactactgtggcgttagcaactactcattggtttggtgtccacctcaagtgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgag |
1628949 |
T |
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| Q |
311 |
caactgccaaaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgcttatttgttacttagttt |
410 |
Q |
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| T |
1628950 |
caactgccacaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatatttttaaaatgacaagatgcttatttgttacttagttt |
1629049 |
T |
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| Q |
411 |
ctgacatattgactttttaaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaatatgaata---atatctctctca |
507 |
Q |
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| T |
1629050 |
ctgacatattgactttttaaacatagatccgctggatcatcaaagttgaacttgtaaagtagtacaaaattaaagaatatgaataattatatctctctca |
1629149 |
T |
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| Q |
508 |
atatacaaattaaagaatattgacacatttt |
538 |
Q |
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| T |
1629150 |
atatacaaattaaagaatattgacacatttt |
1629180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 223 - 531
Target Start/End: Complemental strand, 10821778 - 10821475
Alignment:
| Q |
223 |
gcgttagcaactactcattggtttggtgtgcacctcaagcgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaactgccaaag |
322 |
Q |
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| T |
10821778 |
gcgttagcaactcatccttggtttgctatgcacctcatgtgtttccttctgcgcctagcgcgtgctgatgagatatcaaggagatgagcaactgtcacgc |
10821679 |
T |
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| Q |
323 |
gcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgcttatttgttacttagtttctgacatattga |
422 |
Q |
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| T |
10821678 |
gcgacgcatggcctcatgcgcctcgcgcataggactt--ttctat-tttttttttaaaattacaagattcttatttgttacatagtttatgatatattga |
10821582 |
T |
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| Q |
423 |
ctttttaaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaatatg---aataatatctctctcaatatacaaatta |
519 |
Q |
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| T |
10821581 |
ctttttaaacatatatcagttgaatcatcaaaggtgaacttgtaaagttgtaca-----aaggaatatgaataataatatctctctcaatatacaaatta |
10821487 |
T |
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| Q |
520 |
aagaatattgac |
531 |
Q |
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| T |
10821486 |
aagaatattgac |
10821475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 10821868 - 10821806
Alignment:
| Q |
152 |
tgttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatggacata |
214 |
Q |
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| T |
10821868 |
tgttgatcctcaaacttgtttccaaaccttcaaaaacatgcacgagtctcgcgcatggacata |
10821806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 29413332 - 29413160
Alignment:
| Q |
19 |
tcatcggtcatgtggttccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatg------ataactgtcataaacaa |
112 |
Q |
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||||||| || ||| |||||||||||||| || |||| ||||||||||| ||| ||||||||||||||||||| || || | ||| |||||||| |
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| T |
29413332 |
tcatcggccacgtgattccaaccattacataattgtttatcattcaatcataaaatatgaaagtttagttacacttgattccaatcagtgtaataaacaa |
29413233 |
T |
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| Q |
113 |
cataattcaaaggacggaagagaaatacataagctgcggtgttgatcctcaaacttgtttccaaaccttcaaa |
185 |
Q |
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| T |
29413232 |
cataatttaaagagtggaagagaaatacataaacacatgtgtagatctttaaacttgttttcaagccttcaaa |
29413160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 37545266 - 37545197
Alignment:
| Q |
30 |
gtggttccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgataa |
99 |
Q |
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| T |
37545266 |
gtggtttcaaccattacataaaggttcatcattcaatcataatctattaaagtttagatacacatgataa |
37545197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 7674195 - 7674242
Alignment:
| Q |
53 |
gttcatcattcaatcctaatttatgaaagtttagttacacatgataac |
100 |
Q |
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| T |
7674195 |
gttcatcattcaatcctaatctacgagagtttagttacacatgataac |
7674242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 8320071 - 8320002
Alignment:
| Q |
54 |
ttcatcattcaatcctaatttatgaaagtttagttacacatgataactgtcataaacaacataattcaaa |
123 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||||| ||||| || |||||||||| | |||||| |
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| T |
8320071 |
ttcatcattcaatcataatttatgagagtttagttacacgtgatactagtaataaacaacaaagttcaaa |
8320002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 36296210 - 36296257
Alignment:
| Q |
53 |
gttcatcattcaatcctaatttatgaaagtttagttacacatgataac |
100 |
Q |
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| T |
36296210 |
gttcatgattcaatcctaatctatgagagtttagttacacataataac |
36296257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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