View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13697_low_7 (Length: 443)
Name: NF13697_low_7
Description: NF13697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13697_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 4789215 - 4788833
Alignment:
| Q |
18 |
tatagagcaattaattttcaaagaatttcaaactagacaataaaagtgttatcttttgtttttaagtttcttactaaatgtttttcctcaattaaaatcc |
117 |
Q |
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| T |
4789215 |
tatagagcaattaattttcaaagaatttcaaactaggcaataaaagtgttatcttttgtttttaagtttcttactaaatgtttttcctcgatcagagtcc |
4789116 |
T |
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| Q |
118 |
gagcaaaaactccactatgaatcaacgtttacaatggtgtaaaataacaaagcttaagactcattctcgcaacaaactcgccataattcactcttgtttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4789115 |
gagcaaaaactccactatgaatcaacgtttacaatggtgtgaaatcacaaagcttaagactcattctcgcaacaaactcgccagaattcactcttgtttt |
4789016 |
T |
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| Q |
218 |
gtcactctttttactctatgtgtttgttagacttgaaactgatttcattctagcaatttaacaaccaaaggaatgcatnnnnnnnnnnnnnnnnngattg |
317 |
Q |
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| T |
4789015 |
gtcactc-ttttactctatgtgtttgttagacttgaaactgatttcattctagcaatttaacaaccaaaggaatgcattatatatttatatatatgattg |
4788917 |
T |
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| Q |
318 |
cttctagctcaagctatctagctccaacggttatagcaaactaattactgtgaacctcagtcaccatgacagttaaaagcagtt |
401 |
Q |
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| T |
4788916 |
cttctagctcaagctatctagctccaacggttatagcaaactaattactgtgaacctcagtcaccatgacagttaaaagcagtt |
4788833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 20724527 - 20724414
Alignment:
| Q |
113 |
aatccgagcaaaaactccactatgaatcaacgtttacaatggtgtaaaataacaaagcttaagactcattctcgcaacaaactcgccataattcactctt |
212 |
Q |
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| T |
20724527 |
aatccgagcaaaaactccactacgaatcaatgcttacactggtgtgaaatcacaagacttgagactcattatctcaccaaactcactagatttcactcct |
20724428 |
T |
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| Q |
213 |
gttttgtcactcttt |
227 |
Q |
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||||| ||||||||| |
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| T |
20724427 |
gtttt-tcactcttt |
20724414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 352
Target Start/End: Complemental strand, 20724342 - 20724308
Alignment:
| Q |
318 |
cttctagctcaagctatctagctccaacggttata |
352 |
Q |
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| T |
20724342 |
cttctagctcaagctatctagttccaacggttata |
20724308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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