View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13697_low_8 (Length: 405)
Name: NF13697_low_8
Description: NF13697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13697_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 21764735 - 21764516
Alignment:
| Q |
33 |
tgcgtctgcatgtaaattcacgctaaaatgatttcatacgcttgtgatgaataattgaaagaatggatagatgtagattataaaaattcaatcaa----- |
127 |
Q |
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| T |
21764735 |
tgcgtctgcatgtaaattcacgctaaaaggatttcatacgcttgtgatgaataattgaaagaattgatagatgttgattataaaaattcaatcaagctta |
21764636 |
T |
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| Q |
128 |
---aagtactatcagaagaaaaatactgaatctaatcaacaaatacaaagttaaggaacaagcaaaccctaatagatgaatatgttatgacaaacctaaa |
224 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| |
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| T |
21764635 |
cgtaagtactatcagaagaaacatattgaatctaatcaacaaatacaaagttaaggaacaatcaaaccctaatagatgaatgtgttacgacaaacctaaa |
21764536 |
T |
|
| Q |
225 |
acggtgaacagtaccaaatg |
244 |
Q |
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| |||||||| ||| ||||| |
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| T |
21764535 |
atggtgaacaatacgaaatg |
21764516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 12 - 278
Target Start/End: Complemental strand, 42859978 - 42859689
Alignment:
| Q |
12 |
atcatcaccaaaataagctgctgcgtctgcatgtaaattcacgctaaaatgatttcatacgcttgtgatgaataattgaaagaatggatagatgtagatt |
111 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42859978 |
atcatcaccaaaataagttgca---tctgcatgtaaattcacgctaaaagtatttcatacgcttgtgatgaataattgaaagaatggatagatgttgatt |
42859882 |
T |
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| Q |
112 |
ataaaaattcaatcaaa--------agtactatcagaagaaaaatactgaatctaatc---------------aacaaatacaaagttaaggaacaagca |
188 |
Q |
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| T |
42859881 |
ataaaaattcaatcaaacttacgtaagtactattagaagaaacatactgaatctaatctaatcaaatcaaatcaacaaatacaaagttaaggaacaagca |
42859782 |
T |
|
| Q |
189 |
aaccctaatagat---gaatatgttatgacaaacctaaaacggtgaacagtaccaaatgggagtgtaaatatgttttgtttcattatataatt |
278 |
Q |
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||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42859781 |
aaccctaatagattatgaaaatgttacgacaaacctaaaacggtgaacagtaccaaatgggagcgtaaatatgttttgtttcattatataatt |
42859689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 31917631 - 31917578
Alignment:
| Q |
328 |
aataaaaagcaacaacttagaaaacaaataaattagtataactagaagaaaaaa |
381 |
Q |
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||||||| ||||||||||| |||| |||||||||| || || |||||||||||| |
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| T |
31917631 |
aataaaatgcaacaacttataaaataaataaattaatacaattagaagaaaaaa |
31917578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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