View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13697_low_9 (Length: 392)
Name: NF13697_low_9
Description: NF13697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13697_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 1606474 - 1606125
Alignment:
| Q |
19 |
caccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606474 |
caccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcc |
1606375 |
T |
|
| Q |
119 |
caaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1606374 |
caaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaa |
1606275 |
T |
|
| Q |
219 |
ccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtga |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
1606274 |
ccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaactttcatggacactttagtaagccccctgggttggtctccatggggtga |
1606175 |
T |
|
| Q |
319 |
cactgattttgctcaagacacattgtattatggagagtatgagaattatg |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1606174 |
cactgattttgctcaagacacattgtattatggagagtatgagaattatg |
1606125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 1629772 - 1629423
Alignment:
| Q |
19 |
caccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcc |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||| |
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|
| T |
1629772 |
caccgtagacttcatctttggcaacgccgcagtggtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcactgcc |
1629673 |
T |
|
| Q |
119 |
caaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
1629672 |
caaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaaacctgttgttgacaagtacaaaa |
1629573 |
T |
|
| Q |
219 |
ccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtga |
318 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1629572 |
ccttcttgggcagaccttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtga |
1629473 |
T |
|
| Q |
319 |
cactgattttgctcaagacacattgtattatggagagtatgagaattatg |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629472 |
cactgattttgctcaagacacattgtattatggagagtatgagaattatg |
1629423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 10820926 - 10821275
Alignment:
| Q |
19 |
caccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcc |
118 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
10820926 |
caccgtagacttcatctttggcaacgctgcagtggtattccaaaattgcaacattttcgcaagaaaacctttagatggccaagctaacatgatcactgcc |
10821025 |
T |
|
| Q |
119 |
caaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaa |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10821026 |
caaggtcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaa |
10821125 |
T |
|
| Q |
219 |
ccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtga |
318 |
Q |
| |
|
||||||| || || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
10821126 |
ccttcttaggaagaccttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtctccatggggtga |
10821225 |
T |
|
| Q |
319 |
cactgattttgctcaagacacattgtattatggagagtatgagaattatg |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10821226 |
cactgattttgctcaagacacattgtattatggagagtatgagaattatg |
10821275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 1623596 - 1623255
Alignment:
| Q |
19 |
caccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcc |
118 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
1623596 |
caccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcc |
1623497 |
T |
|
| Q |
119 |
caaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaa |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1623496 |
caaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaa |
1623397 |
T |
|
| Q |
219 |
ccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtga |
318 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1623396 |
ccttcttgggaaggccttggcaacaattctcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtga |
1623297 |
T |
|
| Q |
319 |
cactgattttgctcaagacacattgtattatggagagtatga |
360 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
1623296 |
cacagattttgctcaagatacattgtattatggagagtatga |
1623255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 18781290 - 18780941
Alignment:
| Q |
19 |
caccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcc |
118 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
18781290 |
caccgtcgactttatctttggcaacgccgcagtagtgttccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcc |
18781191 |
T |
|
| Q |
119 |
caaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18781190 |
caaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattatggctgcatcagatctaaagcctgttgttgacaagtacaaaa |
18781091 |
T |
|
| Q |
219 |
ccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtga |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18781090 |
ccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtga |
18780991 |
T |
|
| Q |
319 |
cactgattttgctcaagacacattgtattatggagagtatgagaattatg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18780990 |
cactgattttgctcaagacacattgtattatggcgagtatgagaattatg |
18780941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 12802856 - 12802541
Alignment:
| Q |
19 |
caccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcc |
118 |
Q |
| |
|
|||||| ||||||||||||||||| || || || ||||||||||| || | ||| | | |||| |||||| | || ||||| ||||||||||| ||| |
|
|
| T |
12802856 |
caccgttgacttcatctttggcaacgcagccgtagttttccaaaactgcatgattcttgttagaaggcctttaaacggccaagcaaacatgatcacggcc |
12802757 |
T |
|
| Q |
119 |
caaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaa |
218 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||||| | ||||| | ||| |||||||| || | ||| | ||||| ||||| | || | ||| | |
|
|
| T |
12802756 |
caaggtcgtgatgacccatttcaaaacactggaatttcgattcacaactctcagattagggccgcgccagatttcaagcccgttgtcgggaaattcaaca |
12802657 |
T |
|
| Q |
219 |
ccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtga |
318 |
Q |
| |
|
|||||||||| |||| |||||| ||| || |||||| |||| |||||| | |||||||| | ||| || || || | ||||||||||||||||| | |
|
|
| T |
12802656 |
ccttcttgggccggccctggcaaagatactctagagttgtggtcatgaaatcattcatggataatttggtcagtccaatgggttggtctccatggggagg |
12802557 |
T |
|
| Q |
319 |
cactgattttgctcaa |
334 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
12802556 |
tactaattttgctcaa |
12802541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 8767075 - 8767130
Alignment:
| Q |
29 |
ttcatctttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaa |
84 |
Q |
| |
|
||||||||||| || ||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
8767075 |
ttcatctttggtaacgccgcggtagttttgcaaaattgtaacattttcgcaagaaa |
8767130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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