View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_high_10 (Length: 403)
Name: NF13698_high_10
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 23 - 379
Target Start/End: Original strand, 4858317 - 4858675
Alignment:
| Q |
23 |
gttggtataatctataaaaatttagcatagcacaaacattataatgatttgagtgtgacctatgttatcaatatgaaaatcttgtcggttggttgataat |
122 |
Q |
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| T |
4858317 |
gttggtataatctataaaaatttagcatagcacaaacattataatgatttgagtgtgaactatgttgtcaatatgaaaatcttgtcggttggttgataat |
4858416 |
T |
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| Q |
123 |
attttgta-aacatttgttgaatcttatgattttactgagtttcatgattatttattcttgagaggctaaattgaattggttcattgcaaacaagtgtga |
221 |
Q |
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| T |
4858417 |
attttgtataacatttgttgaatcttatgattttactaagtttcaagattatttattcttgagaggctaaattgaattggttcattgcaaacaagtgtga |
4858516 |
T |
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| Q |
222 |
ttgtgactattgagctatgttatgttcacgtaacaagcttttacatacaataaattgtacattgaattcagaataaataaaagatgtattgttatcaaat |
321 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4858517 |
ttgtgactattgag-tatgttatgttcacgtaacaagcttttacatacaataaattgtacattgaattctgaataaataaaagatgtattgttatcaaat |
4858615 |
T |
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| Q |
322 |
atcaaagaaaatac--nnnnnnnnngaaggaaaaagaaaatacattgtaaaggtcaattt |
379 |
Q |
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| T |
4858616 |
atcaaagaaaatacatattttttttgaaggaaaaagaaaatacattgtaaaggtcaattt |
4858675 |
T |
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