View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13698_high_11 (Length: 393)
Name: NF13698_high_11
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_high_11 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
| [»] scaffold0599 (1 HSPs) |
| | |
|
| [»] scaffold0534 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 37960407 - 37960025
Alignment:
| Q |
1 |
agcttttgatttagcccatgcaagtctctctagagacctctcaggctcaaatatgctggccactgcttcataataagcaatcaggagactcttgttgctt |
100 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
37960407 |
agctgttgttttagcccatgcaagtctctctagagacctctcaggctcaaatatgttggccgctgctacataataagcaatcaggagactctttttgctt |
37960308 |
T |
|
| Q |
101 |
aagccaagcccttctagttctgattccatgtaccacctaatatatagatttttaattgcaaatattggaatgttcattagttattgctttgattgagtga |
200 |
Q |
| |
|
|| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37960307 |
aatccaaacccttcttgttctgattccatgtaccacctaatatatagatttttaattgcaaatattggaatgttcattagttgttgctttgattgagtga |
37960208 |
T |
|
| Q |
201 |
agcatgttagagtgttctctggttattactcttacctgtgtatttctttccattcatcataatgcattgcttgacaactgttgtaatccaaccttgcaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37960207 |
agcatgttagagtgttctctggttattactcttacctgtgtatttctttccattcatcataatgcattgcttgacaattgttgtaatccaaccttgcaag |
37960108 |
T |
|
| Q |
301 |
ctcaagataaacatcattgttcacatacggcatcctatcaaaataaatagaaaaatagaagcatatagtattaaactctacat |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960107 |
ctcaagataaacatcattgttcacatacggcatcctatcaaaataaatagaaaaatagaagcatatagtattaaactctacat |
37960025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 3214359 - 3214319
Alignment:
| Q |
14 |
gcccatgcaagtctctctagagacctctcaggctcaaatat |
54 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
3214359 |
gcccatgcaagtctctcttgagacctttcaggctcaaatat |
3214319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 3179470 - 3179513
Alignment:
| Q |
14 |
gcccatgcaagtctctctagagacctctcaggctcaaatatgct |
57 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
3179470 |
gcccatgcaagtctctcttgagacctttcaggctgaaatatgct |
3179513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 3233970 - 3233929
Alignment:
| Q |
14 |
gcccatgcaagtctctctagagacctctcaggctcaaatatg |
55 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
3233970 |
gcccatgcaagtctctcatgagacctttcaggctcaaatatg |
3233929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 12634294 - 12634638
Alignment:
| Q |
1 |
agcttttgatttagcccatgcaagtctctctagagacctctcaggctcaaatatgctggccactgcttcataataagcaatcaggagactcttgttgctt |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
12634294 |
agctgttgttttagcccatgcaagtctctctagagacctctcgggctcaaatatgctagccgctgctacataataagcaattaggagactctttttgctc |
12634393 |
T |
|
| Q |
101 |
aagccaagcccttctagttctgattccatgtaccacctaatatatagatttttaattgcaaatattggaatgttcattagttattgctttgattgagtga |
200 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||| | ||| || |||| ||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
12634394 |
aatccaaacccttctagttctgattccatgtaccacctaacagataaatatttagttgcaaatattcaaatgttcattagttattgctttcattgagtga |
12634493 |
T |
|
| Q |
201 |
agcatgtt--agagtgttctctggttattactcttacctgtgtat---ttctttccattcatcataatgcattgcttgacaactgttgtaatccaacctt |
295 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||| || || ||||| |||||||| ||||||||||||||||||| |||||||||| ||| || |
|
|
| T |
12634494 |
agcatgttagagagtgttatgtggttattactcttacctttggatttcttcttcccattcattataatgcattgcttgacaattgttgtaatctaacttt |
12634593 |
T |
|
| Q |
296 |
gcaagctcaagataaacatcattgttcacatacggcatcctatca |
340 |
Q |
| |
|
|||||||| || |||| ||||||||||| ||||||||||||||| |
|
|
| T |
12634594 |
gcaagctcgaggtaaatatcattgttcatgtacggcatcctatca |
12634638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 11232 - 11591
Alignment:
| Q |
1 |
agcttttgatttagcccatgcaagtctctctagagacctctcaggctcaaatatgctggccactgcttcataataagcaatcaggagactcttgttgctt |
100 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| || | ||||| ||||| |
|
|
| T |
11232 |
agctgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggcagctgctacatgataagcaaacaacatactctctttgctc |
11331 |
T |
|
| Q |
101 |
aagccaagcccttctagttctgattccatgtaccacctaatatatagatttttaattgcaaatattggaatgttcattagttattgctttgattgagtga |
200 |
Q |
| |
|
|| |||| ||||||||||||||||||||| ||||||||||| ||||||| || | ||||||||||||||||| ||||||||| |
|
|
| T |
11332 |
aatccaaacccttctagttctgattccatttaccacctaat-------------attgcaa----tgca----tcattagttattgctttcattgagtga |
11410 |
T |
|
| Q |
201 |
agcatgttagagtgt-tctc-tggttattactcttacctgtgtat---ttctttccattcatcataatgcattgcttgacaactgttgtaatccaacctt |
295 |
Q |
| |
|
||||| |||||| || | || |||||| ||| ||||||| || || |||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
11411 |
agcattttagagagtatttcgtggttactacccttacctttggatttcttctttccattcatcataatgcattgcttgacaattgttgtaatccaacttt |
11510 |
T |
|
| Q |
296 |
gcaagctcaagataaacatcattgttcacatacggcatcctatcaaaataaatagaaaaatagaagcatatagtattaaac |
376 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11511 |
gcaagctcaagataaacatcattggtcatgtacggcatcctatcaaaataaatagaaaaatagaagcatatagtattaaac |
11591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 3354 - 3008
Alignment:
| Q |
14 |
gcccatgcaagtctctctagagacctctcaggctcaaatatgctggccactgcttcataataagcaatcaggagactcttgttgcttaagccaagccctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||| | || | ||||| ||||| || |||| ||||| |
|
|
| T |
3354 |
gcccatgcaagtctctctagagacctctcaggctcaaatatgctggtcgctgctacatgataagccaacaacatactctctttgctcaatccaaaccctt |
3255 |
T |
|
| Q |
114 |
ctagttctgattccatgtaccacctaatatatagatttttaattgcaaatattggaatgttcattagttattgctttgattgagtgaagcatgttagagt |
213 |
Q |
| |
|
|||||| | ||||||| ||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
3254 |
ctagtttttattccatttaccacctaat-------------attgcaa----tgca----tcattagttattgctttcattgagtgaagcattttagaga |
3176 |
T |
|
| Q |
214 |
gt-tctc-tggttattactcttacctgtgtat---ttctttccattcatcataatgcattgcttgacaactgttgtaatccaaccttgcaagctcaagat |
308 |
Q |
| |
|
|| | || |||||| ||| ||||||| || || |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
3175 |
gtatttcgtggttactacccttacctttggatttcttctttccattcatcataatgcattgcttgacaattgttgtaatccaactttgcaagctcaagtt |
3076 |
T |
|
| Q |
309 |
aaacatcattgttcacatacggcatcctatcaaaataaatagaaaaatagaagcatatagtattaaac |
376 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3075 |
aaacatcattggtcatgtacggcatcctatcaaaataaatagaaaaatagaagcatatagtattaaac |
3008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 11911660 - 11911314
Alignment:
| Q |
14 |
gcccatgcaagtctctctagagacctctcaggctcaaatatgctggccactgcttcataataagcaatcaggagactcttgttgcttaagccaagccctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||| | || | ||||| ||||| || |||| ||||| |
|
|
| T |
11911660 |
gcccatgcaagtctctctagagacctctcaggctcaaatatgctggtcgctgctacatgataagccaacaacatactctctttgctcaatccaaaccctt |
11911561 |
T |
|
| Q |
114 |
ctagttctgattccatgtaccacctaatatatagatttttaattgcaaatattggaatgttcattagttattgctttgattgagtgaagcatgttagagt |
213 |
Q |
| |
|
|||||| | ||||||| ||||||||||| ||||||| || | ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11911560 |
ctagttttaattccatttaccacctaat-------------attgcaa----tgca----tcattagttattgctttcattgagtgaagcatgttagaga |
11911482 |
T |
|
| Q |
214 |
gt-tctc-tggttattactcttacctgtgtat---ttctttccattcatcataatgcattgcttgacaactgttgtaatccaaccttgcaagctcaagat |
308 |
Q |
| |
|
|| | || |||||| ||| ||||||| || || |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
11911481 |
gtatttcgtggttactacccttacctttggatttcttctttccattcatcataatgcattgcttgacaattgttgtaatccaactttgcaagctcaaggt |
11911382 |
T |
|
| Q |
309 |
aaacatcattgttcacatacggcatcctatcaaaataaatagaaaaatagaagcatatagtattaaac |
376 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11911381 |
aaacatcattggccatgtacggcatcctatcaaaataaatagaaaaatagaagcatatagtattaaac |
11911314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 185 - 380
Target Start/End: Original strand, 31151367 - 31151564
Alignment:
| Q |
185 |
tgctttgattgagtgaagcatgttagag--tgttctctggttattactcttacctgtgtatttctttccattcatcataatgcattgcttgacaactgtt |
282 |
Q |
| |
|
|||||| |||||||||| |||||||||| |||| | ||||| ||| |||||||| || ||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
31151367 |
tgctttcattgagtgaaacatgttagagagtgttatgtggtttttattcttacctttggatttcttcccattcatcataatgcattgcttgacaatagtt |
31151466 |
T |
|
| Q |
283 |
gtaatccaaccttgcaagctcaagataaacatcattgttcacatacggcatcctatcaaaataaatagaaaaatagaagcatatagtattaaactcta |
380 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31151467 |
gtaatctaactttgcaagctcaagataaacatcattgttcacgtacggcatcctatcaaaataaatagaaaaatagaagcatattgtattaaactcta |
31151564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 17231217 - 17231085
Alignment:
| Q |
14 |
gcccatgcaagtctctctagagacctctcaggctcaaatatgctggccactgcttcataataagcaatcaggagactcttgttgcttaagccaagccctt |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||| || | ||||| ||||| || |||| ||||| |
|
|
| T |
17231217 |
gcccatgcaagtctctctagagacccctcaggctcaaatatgttggccgctgctacataataagcaaacaacatactctctttgctcaatccaaaccctt |
17231118 |
T |
|
| Q |
114 |
ctagttct----gattccatgtaccacctaata |
142 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
17231117 |
ctagttctgattgattccatgtaccacctaata |
17231085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 9194 - 9062
Alignment:
| Q |
14 |
gcccatgcaagtctctctagagacctctcaggctcaaatatgctggccactgcttcataataagcaatcaggagactcttgttgcttaagccaagccctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || | ||||| ||||| || |||| ||||| |
|
|
| T |
9194 |
gcccatgcaagtctctctagagacctctcaggctcaaatatgctggccgctgctacataataagcaaacaacatactctccttgctcaatccaaaccctt |
9095 |
T |
|
| Q |
114 |
ctagttct----gattccatgtaccacctaata |
142 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
9094 |
ctagttctgattgattccatgtaccacctaata |
9062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 28049952 - 28049807
Alignment:
| Q |
1 |
agcttttgatttagcccatgcaagtctctctagagacctctcaggctcaaatatgctggccactgcttcataataagcaatcaggagactcttgttgctt |
100 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || | ||||| ||||| |
|
|
| T |
28049952 |
agctgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggccgctgctacataataagcaaacaacatactctcattgctc |
28049853 |
T |
|
| Q |
101 |
aagccaagcccttctagttct----gattccatgtaccacctaata |
142 |
Q |
| |
|
|| |||| ||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
28049852 |
aatccaaacccttatagttctgattgattccatgtaccacctaata |
28049807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 19851630 - 19851500
Alignment:
| Q |
17 |
catgcaagtctctctagagacctctcaggctcaaatatgctggccactgcttcataataagcaatcaggagactcttgttgcttaagccaagcccttcta |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || | ||||| ||||| || |||| |||||||| |
|
|
| T |
19851630 |
catgcaattctctctagagacctctcaggctcaaatatgctggccgctgctacataataagcaaacaacatactctctttgctcaatccaaacccttcta |
19851531 |
T |
|
| Q |
117 |
gttct----gattccatgtaccacctaatat |
143 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
19851530 |
gttctgattgattccatgtaccacctaatat |
19851500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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