View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_high_14 (Length: 362)
Name: NF13698_high_14
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_high_14 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 31 - 362
Target Start/End: Complemental strand, 41075611 - 41075280
Alignment:
| Q |
31 |
aaaactgcttctctttctcttactctcagtcctcattctttttcccatgtctttaatcttcccctgggagcttaccaacgtgaaaacatttatcccacct |
130 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075611 |
aaaaatgcttctctttctcttactctcagtcctcattctttttcccatgtctttaatcttcccctgggagcttaccaacgtgaaaacatttatcccacct |
41075512 |
T |
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| Q |
131 |
ttcgtcataacactaactcatcctgcaggtttagtgattgataataaagaattcatatatgcacatagaaactaaatttgtgaatattaaaatcattgct |
230 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41075511 |
ttcgtcataacaataactcatcctgcaggtttagtgattgataataaagaattcatatatgcacatagaaactaaatttgtgaatatcaaaatcattgct |
41075412 |
T |
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| Q |
231 |
gtaaggccacatgctttgttgagatgtccataaaaacttgcctcatcattgtcgatccagtcttcatcttcgccccattcatcataacattcattcaacg |
330 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075411 |
gtaaggccacatgctttgttgagatgtccagaaaaacttgcctcatcattgtcgatccagtcttcatcttcgccccattcatcataacattcattcaacc |
41075312 |
T |
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| Q |
331 |
gccattcctcataagtactcatatcaacccaa |
362 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41075311 |
gccattcctcataagtactcatatcaacccaa |
41075280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 6061 - 6314
Alignment:
| Q |
31 |
aaaactgcttctctttctcttactctcagtcctcattctttttcccatgtctttaatcttcccctgggagcttaccaacgtgaaaacatttatcccacct |
130 |
Q |
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|||||||||||||| |||||| |||| |||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6061 |
aaaactgcttctctatctcttgctctgagtcctcattctttttcccatgtcttcacttttcccctgggagcttaccaacgtgaaaacatttctcccacct |
6160 |
T |
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| Q |
131 |
ttcgtcataacactaactcatcctgcaggtttagtgattgataataaagaattcatatatgcacatagaaactaaatttgtgaatattaaaatcattgct |
230 |
Q |
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||| ||||| | || || | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
6161 |
ttcttcata-ctctgcatccttctgcaggtttagagattgatgataaagaattcatatatgcacatagaaactaaatttgtgaatatcaaaatcattgat |
6259 |
T |
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| Q |
231 |
gtaaggccacatgctttgttgagatgtcc-ataaaaacttgcctcatcattgtcg |
284 |
Q |
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| T |
6260 |
gtaaggccacaaactttgttgagatgtccaaaaaaaacttgcctcatcattgtcg |
6314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 3502 - 3752
Alignment:
| Q |
31 |
aaaactgcttctctttctcttactctcagtcctcattctttttcccatgtctttaatcttcccctgggagcttaccaacgtgaaaacatttatcccacct |
130 |
Q |
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|||||||||||||| |||||| || |||||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||||| |||||||| |
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| T |
3502 |
aaaactgcttctctatctcttgctg--agtcctcattctttttcccatgtcttcacttttcccctgggagcttacccacgtgaaaacatttctcccacct |
3599 |
T |
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| Q |
131 |
ttcgtcataacactaactcatcctgcaggtttagtgattgataataaagaattcatatatgcacatagaaactaaatttgtgaatattaaaatcattgct |
230 |
Q |
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||| | ||| | || || | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
3600 |
ttctttata-ctctgcatccttctgcaggtttagagattgatgataaagaattcatatatgcacatagaaactaaatttgtgaatatcaaaatcattgat |
3698 |
T |
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| Q |
231 |
gtaaggccacatgctttgttgagatgtccataaaaacttgcctcatcattgtcg |
284 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3699 |
gtaaggccacaaactttgttgagatgtccaaaaaaacttgcctcatcattgtcg |
3752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 4382986 - 4382918
Alignment:
| Q |
148 |
tcatcctgcaggtttagtgattgat--aataaagaattcatatatgcacatagaaactaaatttgtgaa |
214 |
Q |
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|||||||| ||||||| ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |
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| T |
4382986 |
tcatcctgttggtttagagattgatgtattaaagaattcaaatatgcacatagaaactgaatttgtgaa |
4382918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 4524915 - 4524971
Alignment:
| Q |
158 |
ggtttagtgattgataataaagaattcatatatgcacatagaaactaaatttgtgaa |
214 |
Q |
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||||||| || ||||| |||| |||||||||||||| | |||||||||||||||||| |
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| T |
4524915 |
ggtttagagaatgatattaaataattcatatatgcataaagaaactaaatttgtgaa |
4524971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 444783 - 444722
Alignment:
| Q |
153 |
ctgcaggtttagtgattgataataaagaattcatatatgcacatagaaactaaatttgtgaa |
214 |
Q |
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|||||||||||| |||||||| ||||||||||| ||||||||| | | | |||||||||||| |
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| T |
444783 |
ctgcaggtttagagattgatattaaagaattcaaatatgcacacaaacaataaatttgtgaa |
444722 |
T |
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