View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_high_16 (Length: 313)
Name: NF13698_high_16
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 4243725 - 4243441
Alignment:
| Q |
13 |
gagatgaatgtgggattccgcaaaagtttcacacataacgcatgattcctcgcactgaattcctcttgcattaagattgacacgagtgggcaagcaatga |
112 |
Q |
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| T |
4243725 |
gagatgagtgtggcattccgcaaaattttcaaacataacacatgattcctcgcactggattcctcttgcattaagattgacacgagtgggcaagcaatta |
4243626 |
T |
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| Q |
113 |
tgagctaaacgccatagaaaggctcggacacggtgaggaatattgagataccagatattcatccatgaagaattattgtgggcagaatcatgagggtgga |
212 |
Q |
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| T |
4243625 |
tgagctaaacgccatagaaaggctcggacacggtgaggaatattgagattccagatattcatccatgaagaattattgtgggcagaatcatgagggtgga |
4243526 |
T |
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| Q |
213 |
gtagatcactacaaatgcggtatgccgacttaaccgtataattaccagttgttgttgttttccatattctggtgtcagacaacag |
297 |
Q |
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| T |
4243525 |
gtagatcactacaaatgcggtatgccgacttaaccgtataattaccagttgttgttgttttccatattctggtgtcagacaacag |
4243441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 33495851 - 33496066
Alignment:
| Q |
13 |
gagatgaatgtgggattccgcaaaagtttcacacataacgcatgattcctcgcactgaattcctcttgcattaagattgacacgagtgggcaagcaatga |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
33495851 |
gagattaatgtgggattccgcaaaagtttcacacataacgcatgattcctcgcactgaattcctcttacattaagattgacacgggtgggcaagaaatga |
33495950 |
T |
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| Q |
113 |
tgagctaaacgccatagaaaggctcggacacggtgaggaatattgagataccagatattcatccatgaagaattattgtgggcagaatcatgagggtgga |
212 |
Q |
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| T |
33495951 |
tgagctaaatgccacataaaggctcgaacacggtgaggaatatcgagagtccagatattcatccaaagagaattattgtgggcagaatcatgagggtgga |
33496050 |
T |
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| Q |
213 |
gtagatcactacaaat |
228 |
Q |
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|||||||| ||||||| |
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| T |
33496051 |
gtagatcaatacaaat |
33496066 |
T |
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