View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13698_high_23 (Length: 251)

Name: NF13698_high_23
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13698_high_23
NF13698_high_23
[»] chr7 (10 HSPs)
chr7 (19-241)||(11277226-11277448)
chr7 (19-241)||(29967919-29968141)
chr7 (23-241)||(47876927-47877145)
chr7 (21-241)||(37919488-37919708)
chr7 (21-241)||(235413-235635)
chr7 (21-228)||(4938104-4938311)
chr7 (27-229)||(17720591-17720793)
chr7 (80-160)||(18532653-18532733)
chr7 (80-136)||(25619508-25619564)
chr7 (80-136)||(37254807-37254863)
[»] chr5 (24 HSPs)
chr5 (19-241)||(23238328-23238550)
chr5 (61-241)||(8227970-8228150)
chr5 (19-242)||(28535649-28535872)
chr5 (21-228)||(30732290-30732497)
chr5 (19-229)||(35983765-35983975)
chr5 (21-229)||(27117137-27117345)
chr5 (21-228)||(12825156-12825363)
chr5 (21-242)||(42928074-42928295)
chr5 (21-228)||(42513677-42513884)
chr5 (80-242)||(19255157-19255320)
chr5 (27-184)||(31641513-31641669)
chr5 (80-174)||(25857459-25857553)
chr5 (46-174)||(8300183-8300311)
chr5 (46-160)||(27767067-27767181)
chr5 (46-160)||(33385375-33385489)
chr5 (131-228)||(12820035-12820132)
chr5 (80-160)||(10776789-10776869)
chr5 (36-120)||(24407993-24408077)
chr5 (36-136)||(18359083-18359183)
chr5 (78-202)||(27795466-27795590)
chr5 (36-207)||(33169636-33169807)
chr5 (82-160)||(18089798-18089876)
chr5 (43-160)||(26072917-26073034)
chr5 (36-125)||(27165943-27166032)
[»] chr6 (14 HSPs)
chr6 (21-241)||(2553581-2553801)
chr6 (21-242)||(18651210-18651431)
chr6 (21-241)||(24767400-24767620)
chr6 (21-189)||(21168194-21168363)
chr6 (70-229)||(12734081-12734240)
chr6 (36-217)||(14372982-14373163)
chr6 (42-214)||(15958810-15958982)
chr6 (80-174)||(17579116-17579210)
chr6 (80-174)||(17573690-17573784)
chr6 (80-145)||(17606369-17606434)
chr6 (46-160)||(10577250-10577364)
chr6 (46-160)||(21630108-21630222)
chr6 (36-227)||(20883024-20883215)
chr6 (36-177)||(13937708-13937849)
[»] scaffold0472 (1 HSPs)
scaffold0472 (19-241)||(3196-3418)
[»] chr8 (17 HSPs)
chr8 (21-241)||(32266508-32266726)
chr8 (21-241)||(13396332-13396552)
chr8 (21-241)||(41665345-41665565)
chr8 (21-226)||(172062-172267)
chr8 (21-228)||(7924343-7924550)
chr8 (27-242)||(9922544-9922759)
chr8 (21-228)||(8299760-8299967)
chr8 (36-241)||(13200067-13200272)
chr8 (46-174)||(20824307-20824435)
chr8 (36-160)||(2170367-2170491)
chr8 (93-227)||(34137011-34137145)
chr8 (46-160)||(37434157-37434271)
chr8 (80-160)||(17699507-17699587)
chr8 (78-202)||(13879520-13879644)
chr8 (80-144)||(43270491-43270555)
chr8 (113-241)||(2529830-2529958)
chr8 (80-136)||(5181719-5181775)
[»] chr3 (22 HSPs)
chr3 (23-241)||(34332793-34333011)
chr3 (21-242)||(40930504-40930725)
chr3 (21-228)||(2364234-2364441)
chr3 (21-228)||(7312733-7312940)
chr3 (21-229)||(19920205-19920413)
chr3 (24-228)||(10323550-10323754)
chr3 (80-241)||(26771024-26771185)
chr3 (46-160)||(29523746-29523860)
chr3 (82-214)||(7032289-7032421)
chr3 (36-160)||(11203844-11203968)
chr3 (80-160)||(33496572-33496652)
chr3 (46-160)||(12342227-12342340)
chr3 (36-205)||(2755822-2755991)
chr3 (83-174)||(7031055-7031146)
chr3 (46-212)||(17097877-17098043)
chr3 (36-177)||(963154-963295)
chr3 (80-136)||(35214406-35214462)
chr3 (84-124)||(16179009-16179049)
chr3 (45-139)||(15312629-15312723)
chr3 (80-130)||(19890733-19890783)
chr3 (36-177)||(3140860-3141001)
chr3 (80-160)||(36801110-36801190)
[»] chr4 (18 HSPs)
chr4 (24-241)||(1828519-1828736)
chr4 (21-229)||(15740177-15740385)
chr4 (21-242)||(7403856-7404077)
chr4 (21-241)||(19755208-19755431)
chr4 (21-241)||(19784375-19784598)
chr4 (21-229)||(47685871-47686079)
chr4 (24-228)||(47418761-47418965)
chr4 (21-228)||(13270867-13271074)
chr4 (21-228)||(23642567-23642774)
chr4 (36-181)||(11587189-11587334)
chr4 (80-160)||(45472744-45472824)
chr4 (36-160)||(55725677-55725801)
chr4 (46-160)||(12697838-12697952)
chr4 (80-188)||(20002722-20002830)
chr4 (80-139)||(8361146-8361205)
chr4 (36-203)||(46145657-46145824)
chr4 (80-160)||(2822072-2822152)
chr4 (84-124)||(5790131-5790171)
[»] chr1 (10 HSPs)
chr1 (21-228)||(51052437-51052644)
chr1 (25-228)||(11909085-11909288)
chr1 (21-228)||(6050560-6050767)
chr1 (21-228)||(35541006-35541213)
chr1 (36-212)||(47623068-47623244)
chr1 (80-174)||(16917844-16917938)
chr1 (80-160)||(43388392-43388472)
chr1 (80-160)||(37191245-37191325)
chr1 (37-123)||(28351776-28351862)
chr1 (87-139)||(22191823-22191875)
[»] chr2 (9 HSPs)
chr2 (21-228)||(4552126-4552333)
chr2 (36-242)||(41206959-41207165)
chr2 (36-226)||(28252679-28252869)
chr2 (80-214)||(17764997-17765131)
chr2 (84-241)||(15917598-15917755)
chr2 (80-241)||(12645480-12645641)
chr2 (80-160)||(14439777-14439857)
chr2 (36-160)||(38604365-38604489)
chr2 (80-134)||(10999986-11000040)
[»] scaffold0369 (1 HSPs)
scaffold0369 (26-229)||(11186-11389)
[»] scaffold0034 (1 HSPs)
scaffold0034 (21-228)||(105819-106026)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 11277226 - 11277448
Alignment:
Q  19 actctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagt 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11277226 actctgtacgtggagtctatgatatgctgacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagt 11277325  T
Q  119 atctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttct 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11277326 atctatccttgcttggcgacttttgagagatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttct 11277425  T
Q  219 ggatgtgggaacgttgatgatgt 241  Q
    ||||||||||||||||| |||||    
T  11277426 ggatgtgggaacgttgaagatgt 11277448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 29968141 - 29967919
Alignment:
Q  19 actctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29968141 actctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagt 29968042  T
Q  119 atctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttct 218  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29968041 atctatccttgcttgaggacttttgagagatcggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttct 29967942  T
Q  219 ggatgtgggaacgttgatgatgt 241  Q
    ||||||||||||||||| |||||    
T  29967941 ggatgtgggaacgttgaagatgt 29967919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 47877145 - 47876927
Alignment:
Q  23 tgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatct 122  Q
    |||||||||||  ||||| |||||||||||||||||||| ||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||    
T  47877145 tgtacgtggagtttatgacatgctgacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatct 47877046  T
Q  123 atccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggat 222  Q
    |||||||||||||||||| ||||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47877045 atccttgcttggcgacttctgagagatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggat 47876946  T
Q  223 gtgggaacgttgatgatgt 241  Q
    | ||||||||||| |||||    
T  47876945 gcgggaacgttgaagatgt 47876927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 37919708 - 37919488
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||| |||||||  ||||| |||||||||||||||||||| ||||| ||||| |||  |||| ||||||||||| ||||||||||||||||||||||||    
T  37919708 tctgtgcgtggagtatatgacatgctgacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtat 37919609  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||||||  |||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  37919608 ctatccttgcttggcgactcctgagagattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctag 37919509  T
Q  221 atgtgggaacgttgatgatgt 241  Q
     |||||||||||||| |||||    
T  37919508 ttgtgggaacgttgaagatgt 37919488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 235413 - 235635
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| ||| |||||||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||| ||||||||| |    
T  235413 tctgtacgtggagtctatgacatgttgacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtct 235512  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctac--gaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttct 218  Q
    |||||||||||||||||||| |||| || |||||||||||   |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  235513 ctatccttgcttggcgacttctgagggatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttct 235612  T
Q  219 ggatgtgggaacgttgatgatgt 241  Q
    || || | ||||||||| |||||    
T  235613 ggttgcgagaacgttgaagatgt 235635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 4938104 - 4938311
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |    
T  4938104 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtct 4938203  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| || ||| ||||    
T  4938204 ctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctgg 4938303  T
Q  221 atgtggga 228  Q
    ||||||||    
T  4938304 atgtggga 4938311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 17720793 - 17720591
Alignment:
Q  27 cgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatcc 126  Q
    |||||||||||||| |||||||||||||||||||| || || ||||| || |   |||||||||||||||||| |||||||||||||||||| |||||||    
T  17720793 cgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatcc 17720694  T
Q  127 ttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgg 226  Q
    |||| ||||||||| |||| || ||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||    
T  17720693 ttgcatggcgacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctagttgtgg 17720594  T
Q  227 gaa 229  Q
    |||    
T  17720593 gaa 17720591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 18532733 - 18532653
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    |||||||||||| | |||||||||||||||| | ||||| | |||||||||||||||||| ||||| || || ||||||||    
T  18532733 tatggagttaatctcgcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 18532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 25619564 - 25619508
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcg 136  Q
    |||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||    
T  25619564 tatggagttaatatggcataaacaggttcctttaaaagtttctatccttgcttggcg 25619508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 37254863 - 37254807
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcg 136  Q
    |||||||||||| ||||||||||||||| || | ||||| || ||||||||||||||    
T  37254863 tatggagttaatctggcataaacaggttactttaaaagtttcaatccttgcttggcg 37254807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 23238550 - 23238328
Alignment:
Q  19 actctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagt 118  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  23238550 actctgtacgtggagtctatgatatgctaacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagt 23238451  T
Q  119 atctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttct 218  Q
     ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23238450 ttctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttct 23238351  T
Q  219 ggatgtgggaacgttgatgatgt 241  Q
    ||||||||||||||||| |||||    
T  23238350 ggatgtgggaacgttgaagatgt 23238328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 61 - 241
Target Start/End: Complemental strand, 8228150 - 8227970
Alignment:
Q  61 aaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  8228150 aaccccagttacaccataatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctac 8228051  T
Q  161 gaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgatgatgt 241  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  8228050 gaaaagtaatttggcaaaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgt 8227970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 28535649 - 28535872
Alignment:
Q  19 actctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagt 118  Q
    ||||||||| |||||||||||| |||||||||||||||||||| || |||||||| || |  ||||||||||||||||||| ||||||||||||||||||    
T  28535649 actctgtacatggagcctatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagt 28535748  T
Q  119 atctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttct 218  Q
     ||||||||||||||||||||| |||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  28535749 ttctatccttgcttggcgacttctgagggatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttct 28535848  T
Q  219 ggatgtgggaacgttgatgatgtc 242  Q
    || |||||||| || || ||||||    
T  28535849 ggttgtgggaatgtagaagatgtc 28535872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 30732290 - 30732497
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  30732290 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtat 30732389  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    ||||| |||||||||||||| |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| |||||||||||    
T  30732390 ctatctttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctgg 30732489  T
Q  221 atgtggga 228  Q
    ||||||||    
T  30732490 atgtggga 30732497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 35983765 - 35983975
Alignment:
Q  19 actctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagt 118  Q
    |||||||||||||||||||||| |||||||||||||||||||| || |||||||| || |  |||||||||||||||| || ||||||||||||||||||    
T  35983765 actctgtacgtggagcctatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagt 35983864  T
Q  119 atctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttct 218  Q
    |||||||||||||||||||||| ||||  | ||||||||||| |||| |||||||||||||| || |||||||||||||||||||||||||||||||| |    
T  35983865 atctatccttgcttggcgacttctgaggaatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgttttt 35983964  T
Q  219 ggatgtgggaa 229  Q
    || ||||||||    
T  35983965 ggttgtgggaa 35983975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 27117137 - 27117345
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| ||||||||||||||||||||   |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  27117137 tctgtacgtggagtctatgacatgctgacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtat 27117236  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||| |||| ||||||||||| || |||  |||||||| ||||||||||||| || || |||||| |||||| |||||||||||    
T  27117237 ctatccttgcttggcgacttctgagggaccggttacccacaaaacttaatttggtaaaccgtggcattctatctatggaggagcggttatgtgtttctgg 27117336  T
Q  221 atgtgggaa 229  Q
     ||||||||    
T  27117337 ctgtgggaa 27117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 12825363 - 12825156
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    |||| |||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  12825363 tctgcacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtat 12825264  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
     ||||||||||||||||||| |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| |||||||||||    
T  12825263 gtatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctgg 12825164  T
Q  221 atgtggga 228  Q
    ||||||||    
T  12825163 atgtggga 12825156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 42928295 - 42928074
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| ||||||||||| ||||| || ||||||||||| |  | |||||||||||||||| |||||||||||||||||||||| |    
T  42928295 tctgtacgtggagtctatgacatgctgacatcgcaggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtct 42928196  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    ||||||||| |||||| ||| |||| || |||||| |||| |||| ||||||| ||||| ||||||||||||| ||||||| |||||||||||| |||||    
T  42928195 ctatccttgtttggcggcttctgagggatcggttaactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctgg 42928096  T
Q  221 atgtgggaacgttgatgatgtc 242  Q
    ||| ||||||||||| ||||||    
T  42928095 atgcgggaacgttgaagatgtc 42928074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 42513884 - 42513677
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |    
T  42513884 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtct 42513785  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || ||||||||||| |||  |||||||||||| |||| |||| || || |||||| |||||| || ||| ||||    
T  42513784 ctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtgacattctatctgtggaggagcggttatgcgttgctgg 42513685  T
Q  221 atgtggga 228  Q
    ||||||||    
T  42513684 atgtggga 42513677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 242
Target Start/End: Original strand, 19255157 - 19255320
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaac 179  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||  || |||| || ||||||||||| |||| ||||||||||||     
T  19255157 tatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggcaaat 19255256  T
Q  180 cgtggcattttacctttggag-gcgcggttgtgtgtttctggatgtgggaacgttgatgatgtc 242  Q
     |||||||| | || |||||| ||||||||||||||  ||||||| ||| ||||||| ||||||    
T  19255257 tgtggcattattcccttggagcgcgcggttgtgtgtcactggatgcgggcacgttgaagatgtc 19255320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 31641669 - 31641513
Alignment:
Q  27 cgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatcc 126  Q
    |||||||| ||||| |||||||||||||||||||| || || ||||| || |  ||||||||||||||||||| |||||||||||| ||||| |||||||    
T  31641669 cgtggagcatatgacatgctgacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatcc 31641571  T
Q  127 ttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtgg 184  Q
    |||| ||| ||||  |||| || ||||||||||| |||| ||||||||||||||||||    
T  31641570 ttgcatggagactactgagggatcggttacctacaaaaaataatttggcaaaccgtgg 31641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 25857459 - 25857553
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttgg 174  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||| || || |||||||| |||  ||||||||    
T  25857459 tatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 25857553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 8300183 - 8300311
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||| ||||| ||  | || || | ||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||| |||||    
T  8300183 tgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgag 8300282  T
Q  146 agaccggttacctacgaaaagtaatttgg 174  Q
     || || |||||||| |||  ||||||||    
T  8300283 ggatcgcttacctactaaatctaatttgg 8300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 27767181 - 27767067
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||| ||||| ||  | || || | ||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||| |||||    
T  27767181 tgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgag 27767082  T
Q  146 agaccggttacctac 160  Q
     || || ||||||||    
T  27767081 ggatcgtttacctac 27767067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 33385375 - 33385489
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||| ||||| ||  | || || | ||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||| |||||    
T  33385375 tgacatcacaggaacaacctcatattcatcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgttgag 33385474  T
Q  146 agaccggttacctac 160  Q
     || || ||||||||    
T  33385475 ggatcgtttacctac 33385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 12820035 - 12820132
Alignment:
Q  131 ttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtggga 228  Q
    |||||||||| |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| |||||||||||||||||||    
T  12820035 ttggcgacttatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtggga 12820132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 10776869 - 10776789
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    ||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||  |||| || || ||||||||    
T  10776869 tatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 10776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 24408077 - 24407993
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||| ||||||| ||||| ||||||  |||||| || ||||||||||| ||||||||||||||||| ||| | |||||||    
T  24408077 tatgatatgttgacatcgcaggaacaacccatgttacatcaaagtatggagttgatttggcataaacaggtacctttgaaagtat 24407993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 18359083 - 18359183
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||| ||| ||||||||||||| ||||| ||  | || || | |||||||||||| | |||||||||||||||| | ||||| || |||||||||||||    
T  18359083 tatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctagcataaacaggttcctttaaaagtttcaatccttgcttggc 18359182  T
Q  136 g 136  Q
    |    
T  18359183 g 18359183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 27795590 - 27795466
Alignment:
Q  78 agtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaa 177  Q
    |||||||||||| | ||||| |||||||| |||||||||||  |  || ||||||||||  | ||||| || || || ||||| |||   ||||||||||    
T  27795590 agtatggagttagtctggcacaaacaggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttgcctactaaagccaatttggcaa 27795491  T
Q  178 accgtggcattttacctttggaggc 202  Q
    | |||||||||||||| ||||||||    
T  27795490 atcgtggcattttaccgttggaggc 27795466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 207
Target Start/End: Complemental strand, 33169807 - 33169636
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    |||||||||||||| ||  ||||  |||||  |||||| || | ||||||||| |||||||| |||||||| ||| | ||||| |||||  |||||||||    
T  33169807 tatgatatgctgacttcgtaggaaaaacccatgttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggc 33169708  T
Q  136 gacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggt 207  Q
    |  |  |||| |||||||||||||| |||   ||||||||||  |||||  | ||| ||||||||| |||||    
T  33169707 gtttgctgagggaccggttacctactaaacaaaatttggcaagtcgtggggtcttatctttggaggagcggt 33169636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 18089798 - 18089876
Alignment:
Q  82 tggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    |||||||||||||||| |||||||| ||  | ||||| |||||| ||||||| ||||| |||||||| || ||||||||    
T  18089798 tggagttaatttggcacaaacaggtaccgttgaaagtctctatctttgcttgacgactattgagagatcgtttacctac 18089876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 26073034 - 26072917
Alignment:
Q  43 tgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactttt 142  Q
    |||||||||| ||||| || ||||| || || || | | |||||||||||||||||||| | |||||| | |||||  ||||| ||| ||||||||| ||    
T  26073034 tgctgacatcgcaggaacagccccatttgcatcaaaatttggagttaatttggcataaatatgttcctttgaaagtccctatctttgtttggcgactgtt 26072935  T
Q  143 gagagaccggttacctac 160  Q
    ||| || || ||||||||    
T  26072934 gagggatcgattacctac 26072917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 27165943 - 27166032
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatc 125  Q
    ||||| ||| || |||||||||| |||||| | ||||| || | |||||| |||||||||||  ||||||| ||||| ||||| ||||||    
T  27165943 tatgacatgttggcatcacaggaacaacccaatttacatcaaaatatggaattaatttggcaccaacaggtacctctaaaagtctctatc 27166032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 2553801 - 2553581
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2553801 tctgtacgtggagtctatgatatgctgacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtat 2553702  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2553701 ctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctgg 2553602  T
Q  221 atgtgggaacgttgatgatgt 241  Q
    ||||||||||||||| |||||    
T  2553601 atgtgggaacgttgaagatgt 2553581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 18651210 - 18651431
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||| ||||| |||||| |||||||||||||||||||| ||||||||| | || | ||||||||||||||||||||||||||||||||||||||| |    
T  18651210 tctgtacatggagtctatgacatgctgacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtct 18651309  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||| |||| || ||||||||||| |||| |||||||| ||||||||| |||||||||||||| |||||||||||||| |||||    
T  18651310 ctatccttgcttggcgacttctgagggatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctgg 18651409  T
Q  221 atgtgggaacgttgatgatgtc 242  Q
    ||| |||| |||||| ||||||    
T  18651410 atgcgggaccgttgaagatgtc 18651431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 24767400 - 24767620
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||| ||||||| || | |||||||||||||| |||||||||||||||| ||||||| |    
T  24767400 tctgtacgtggagtctatgacatgctgacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtct 24767499  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    ||||||||||||| |||||| | || || ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  24767500 ctatccttgcttgacgacttcttagggatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttgg 24767599  T
Q  221 atgtgggaacgttgatgatgt 241  Q
     || ||||||||||| |||||    
T  24767600 ttgcgggaacgttgaagatgt 24767620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 21168363 - 21168194
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  21168363 tctgtacgtggagtctatgatatgttgacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtat 21168264  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctac-gaaaagtaatttggcaaaccgtggcattt 189  Q
    ||||||| |||||| ||||||||  ||| || ||||||||  ||||  || |||||||||||||||||||    
T  21168263 ctatcctagcttggagacttttgcaagatcgattacctacaaaaaaaaaaattggcaaaccgtggcattt 21168194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 12734240 - 12734081
Alignment:
Q  70 tacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaa 169  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||  |||    
T  12734240 tacatcataatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 12734141  T
Q  170 tttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaa 229  Q
    ||||| || |||||||||| || || |||||| |||||| ||||||||| ||||||||||    
T  12734140 tttggtaacccgtggcattctatctctggaggagcggttatgtgtttctagatgtgggaa 12734081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 14372982 - 14373163
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||| ||||||||||| ||||| || || ||||||||   |  |||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  14372982 tatgacatgctgacatcccaggaacagcctcagttacattcttctatggatttaatttggcataaacaggtacctctaaaagtatctattcttgcttggc 14373081  T
Q  136 gacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttc 217  Q
      ||||||||  || | |||||||||||| | ||||||||||||||||||||| |  || |||||| |||||||||||||||    
T  14373082 agcttttgaggaacggcttacctacgaaaggaaatttggcaaaccgtggcattatttctatggaggggcggttgtgtgtttc 14373163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 15958810 - 15958982
Alignment:
Q  42 atgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttt 141  Q
    ||||||||||||||||| ||||  |||||||| |  | |||| ||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||    
T  15958810 atgctgacatcacaggaacaacttcagttacatccaaatatgaagttaatatggcataaacaggttcctcttaaagtctctattcttgcttggcggcttt 15958909  T
Q  142 tgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgt 214  Q
    |||| || |  ||||||||||||   ||||||||||||| ||| ||  | |||||||||| || |||||||||    
T  15958910 tgagggatcatttacctacgaaagcaaatttggcaaaccatggtatcattcctttggaggtgcagttgtgtgt 15958982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 17579116 - 17579210
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttgg 174  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||| || || |||||||| |||  ||||||||    
T  17579116 tatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 17579210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 17573690 - 17573784
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttgg 174  Q
    ||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||||| ||||| || || |||||||| |||  ||||||||    
T  17573690 tatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 17573784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 17606369 - 17606434
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||    
T  17606369 tatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgag 17606434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 10577250 - 10577364
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||| ||||| ||  | || || | ||| ||||||||||||||||||||||||||| | ||||| | |||||||||||||||||| |||||    
T  10577250 tgacatcacaggaacaacctcatgttcatcaaaatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgag 10577349  T
Q  146 agaccggttacctac 160  Q
     || || ||||||||    
T  10577350 ggatcgtttacctac 10577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 21630108 - 21630222
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||| ||||| ||  | || || | ||||||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||| |||||    
T  21630108 tgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaccaggttcctttaaaagtttctatccttgtttggcgactattgag 21630207  T
Q  146 agaccggttacctac 160  Q
     || || ||||||||    
T  21630208 ggatcgtttacctac 21630222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 20883024 - 20883215
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||| ||| ||||||||||||| ||||| ||  | || || | |||||||||||| ||||||||| |||||||| | ||||| ||||||||||||||||    
T  20883024 tatgacatgttgacatcacaggaacaaccacatgttcatcaaaatatggagttaatctggcataaataggttcctttaaaagtttctatccttgcttggc 20883123  T
Q  136 gacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtggg 227  Q
    | || ||||| ||  | |||||||| |||   || |||| | | ||||||||| || || ||||||| ||||| |||||  | |||||||||    
T  20883124 ggctgttgagggattgtttacctactaaatcgaacttggtagatcgtggcattatatctgtggaggctcggttttgtgtcacgggatgtggg 20883215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 13937849 - 13937708
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||||||| |||| || ||||| ||||||  |||||| || | ||||||||| |||||||| |||||||| ||| | ||||| |||||  |||||||||    
T  13937849 tatgatatgttgacttcgcaggaacaacccatgttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggc 13937750  T
Q  136 gacttttgagagaccggttacctacgaaaagtaatttggcaa 177  Q
    |  |  |||| |||||||||||||| |||   ||||||||||    
T  13937749 gtttgctgagggaccggttacctactaaacaaaatttggcaa 13937708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 3418 - 3196
Alignment:
Q  19 actctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagt 118  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  3418 actcagtacgtggagtctatgatatgctgacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagt 3319  T
Q  119 atctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttct 218  Q
     ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3318 ttctatccttgcttggagacttttgagagatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttct 3219  T
Q  219 ggatgtgggaacgttgatgatgt 241  Q
    ||||||||||||||||| |||||    
T  3218 ggatgtgggaacgttgaagatgt 3196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 32266726 - 32266508
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    |||||||||||||||||||||  |||||| ||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  32266726 tctgtacgtggagcctatgat--gctgacttcacaagagcaaccacagttacaccataatttggagttaatttggcataaacaggttcctctcaaagtat 32266629  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32266628 ctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 32266529  T
Q  221 atgtgggaacgttgatgatgt 241  Q
    ||||||||||||||| |||||    
T  32266528 atgtgggaacgttgaagatgt 32266508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 13396552 - 13396332
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||| | |||||| |||||||||||||||||||| ||||| ||||| |||  |||||||||||||||||||||||| ||||||||||||||||    
T  13396552 tctgtacgtggggtctatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtat 13396453  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13396452 ctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 13396353  T
Q  221 atgtgggaacgttgatgatgt 241  Q
    ||||||||||||||| |||||    
T  13396352 atgtgggaacgttgaagatgt 13396332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 41665345 - 41665565
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    |||||| |||| | |||||| |||||||||||||||||||| ||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  41665345 tctgtatgtggggtctatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtat 41665444  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    ||||||||||||||||| |  | ||||| | ||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  41665445 ctatccttgcttggcgattcctaagagatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctgg 41665544  T
Q  221 atgtgggaacgttgatgatgt 241  Q
    ||||||||||||||| |||||    
T  41665545 atgtgggaacgttgaagatgt 41665565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 172267 - 172062
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| ||||||||||||||||||||   ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  172267 tctgtacgtggagtctatgacatgctgacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctcaaagtat 172168  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||| |||| ||||||||||| || |||  |||||||| |||||||| |||| || || |||||| |||||| |||||||||||    
T  172167 ctatccttgcttggcgacttctgagggaccggttacccacaaaacttaatttggtaaaccgtgacattctatctatggaggagcggttatgtgtttctgg 172068  T
Q  221 atgtgg 226  Q
     |||||    
T  172067 ctgtgg 172062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 7924550 - 7924343
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |    
T  7924550 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtct 7924451  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| || ||| ||||    
T  7924450 ctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctgg 7924351  T
Q  221 atgtggga 228  Q
    ||||||||    
T  7924350 atgtggga 7924343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 9922759 - 9922544
Alignment:
Q  27 cgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatcc 126  Q
    |||||||||||||| |||||||||||||||||||| || || ||||| || |   |||||||||||||||||| |||||||||||||||||| |||||||    
T  9922759 cgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatcc 9922660  T
Q  127 ttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgg 226  Q
    |||| || |||||| |||| || ||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||    
T  9922659 ttgcatgacgacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtgg 9922560  T
Q  227 gaacgttgatgatgtc 242  Q
    ||| || || ||||||    
T  9922559 gaatgtagaagatgtc 9922544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 8299967 - 8299760
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||| | ||||| |||||||||| | |||| |||||||||||||||||||| |||||||||||||    
T  8299967 tctgtacgtggagtctatgacatgctgacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctcaaagtat 8299868  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| ||| || |||||| ||||    
T  8299867 ctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtgttgctgg 8299768  T
Q  221 atgtggga 228  Q
    ||||||||    
T  8299767 atgtggga 8299760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 13200272 - 13200067
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||||||| ||||||||||||| ||||| ||  | || || | |||||||||| |||||||||||||||||||||| ||||| || |||||||||||||    
T  13200272 tatgatatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttagtttggcataaacaggttcctctaaaagtttcaatccttgcttggc 13200173  T
Q  136 gacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttga 235  Q
      || ||||| || || |||||||| |||   ||||||||| | ||  | ||| ||||| ||||||| ||||| |||||| |||| |||||| | |||||    
T  13200172 agctattgagggatcgtttacctacaaaatacaatttggcagagcgcagaattctacctatggaggctcggttttgtgttactgggtgtgggcatgttga 13200073  T
Q  236 tgatgt 241  Q
     |||||    
T  13200072 agatgt 13200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 20824435 - 20824307
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||| ||||| ||  | || || | ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||    
T  20824435 tgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgag 20824336  T
Q  146 agaccggttacctacgaaaagtaatttgg 174  Q
     || || |||||||| |||  ||||||||    
T  20824335 ggatcgcttacctactaaatctaatttgg 20824307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 2170491 - 2170367
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||| ||| ||||||||||||| ||||| ||  | || || | |||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||    
T  2170491 tatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgcttggc 2170392  T
Q  136 gacttttgagagaccggttacctac 160  Q
    |||  ||||| || || ||||||||    
T  2170391 gaccgttgagggatcgtttacctac 2170367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 34137011 - 34137145
Alignment:
Q  93 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttac 192  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| ||| |||  || || ||||||||||||   |||||||||||||| || ||  | |    
T  34137011 tggcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctacgaaagaaaatttggcaaaccgcggtatcattc 34137110  T
Q  193 ctttggaggcgcggttgtgtgtttctggatgtggg 227  Q
    || |||||| ||||||||||| | |||| ||||||    
T  34137111 ctgtggaggggcggttgtgtgctactggttgtggg 34137145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 37434271 - 37434157
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||| ||||| ||  | || || | |||||||||||||||||||||||| |||||| | ||||| ||||| |||||||||||||| |||||    
T  37434271 tgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacatgttcctttaaaagtctctattcttgcttggcgactgttgag 37434172  T
Q  146 agaccggttacctac 160  Q
     || || ||||||||    
T  37434171 ggatcgtttacctac 37434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 17699587 - 17699507
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    ||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||  |||| || || ||||||||    
T  17699587 tatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 13879520 - 13879644
Alignment:
Q  78 agtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaa 177  Q
    |||||||||||| | ||||| ||| |||| |||||||||||  |  || ||||||||||  | ||||| || || |||||||| |||   ||||||||||    
T  13879520 agtatggagttagtctggcacaaataggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttacctactaaagccaatttggcaa 13879619  T
Q  178 accgtggcattttacctttggaggc 202  Q
    | |||||||||||||| ||||||||    
T  13879620 atcgtggcattttaccgttggaggc 13879644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 43270555 - 43270491
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttga 144  Q
    ||||||||| || |||||||||||||||||| | ||||| ||||||||| |||||||||| ||||    
T  43270555 tatggagttcatctggcataaacaggttcctttaaaagtttctatccttacttggcgactgttga 43270491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 2529958 - 2529830
Alignment:
Q  113 caaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgt 212  Q
    |||||| || |||||||||||||| || ||||| || || |||||||| |||   ||||||| | | ||||| ||| ||| ||||||||| ||||| |||    
T  2529958 caaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattctacttttggaggctcggttttgt 2529859  T
Q  213 gtttctggatgtgggaacgttgatgatgt 241  Q
    ||| | || |||||| | ||||| |||||    
T  2529858 gttacagggtgtgggcatgttgaagatgt 2529830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 5181775 - 5181719
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcg 136  Q
    ||||||| ||||||||||||||||||| ||||| ||||| | ||| |||| ||||||    
T  5181775 tatggagataatttggcataaacaggtgcctctaaaagtctatattcttgtttggcg 5181719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 34332793 - 34333011
Alignment:
Q  23 tgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatct 122  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  34332793 tgtacgtggagcctatgacatgctgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatct 34332892  T
Q  123 atccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggat 222  Q
    ||||||||||||| |||| ||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34332893 atccttgcttggcaacttctgagagatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggat 34332992  T
Q  223 gtgggaacgttgatgatgt 241  Q
    ||||||||||||| |||||    
T  34332993 gtgggaacgttgaagatgt 34333011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 40930504 - 40930725
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| ||||| || || |  ||||||||| |||| |||||||||||||||||||||||||    
T  40930504 tctgtacgtggagtctatgacatgctgacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtat 40930603  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    ||||||||||||||||||||||||| ||  |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40930604 ctatccttgcttggcgacttttgagggattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctgg 40930703  T
Q  221 atgtgggaacgttgatgatgtc 242  Q
     ||||||||||| || ||||||    
T  40930704 ttgtgggaacgtcgaagatgtc 40930725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 2364441 - 2364234
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  2364441 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtat 2364342  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| || ||| ||||    
T  2364341 ctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctgg 2364242  T
Q  221 atgtggga 228  Q
    ||||||||    
T  2364241 atgtggga 2364234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 7312940 - 7312733
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  7312940 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtat 7312841  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || ||||||||||| |||  |||||||||||| ||||||||| |  || |||||| |||| | |||||||||||    
T  7312840 ctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctgtctgtggaggagcggctttgtgtttctgg 7312741  T
Q  221 atgtggga 228  Q
    ||||||||    
T  7312740 atgtggga 7312733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 19920205 - 19920413
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| ||| |||||||||||||| | |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||    
T  19920205 tctgtacgtggagtctatgacatgttgacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctcaaagtat 19920304  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||| |||| || ||||||||||| |||  |||||||| ||| || |||||| || || |||||| |||||| |||||||||||    
T  19920305 ctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctgg 19920404  T
Q  221 atgtgggaa 229  Q
    |||||||||    
T  19920405 atgtgggaa 19920413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 10323550 - 10323754
Alignment:
Q  24 gtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatcta 123  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10323550 gtacgtggagtctatgatatgctgacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatcta 10323649  T
Q  124 tccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatg 223  Q
    ||||||||||||||||  |||| || ||||||||||| |||  |||||||||||  ||||||||| || ||  ||| | |||||| || ||| |||||||    
T  10323650 tccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggatgagcggttatgcgttgctggatg 10323749  T
Q  224 tggga 228  Q
    |||||    
T  10323750 tggga 10323754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 241
Target Start/End: Original strand, 26771024 - 26771185
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaac 179  Q
    |||||||||||| ||||||||||||| |||||| ||||| ||||| ||| ||||||| |||||||| || || ||||||||||||   ||||||||||||    
T  26771024 tatggagttaatgtggcataaacaggctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctacgaaagcaaatttggcaaac 26771123  T
Q  180 cgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgatgatgt 241  Q
    ||||| ||  | |||||||||| || |||||||||  |||| |||||| |||| || |||||    
T  26771124 cgtggtatcattcctttggaggtgcagttgtgtgtcactggttgtgggcacgtggaagatgt 26771185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 29523746 - 29523860
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||| ||||| ||  | || || | ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||    
T  29523746 tgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgag 29523845  T
Q  146 agaccggttacctac 160  Q
     || || ||||||||    
T  29523846 ggatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 7032421 - 7032289
Alignment:
Q  82 tggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccg 181  Q
    |||||||  ||||||| |||||||||||||||||| | ||||||||||| ||||||||| |||| || ||||||||||| ||||  ||| |||| ||  |    
T  7032421 tggagttggtttggcacaaacaggttcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaattg 7032322  T
Q  182 tggcattttacctttggaggcgcggttgtgtgt 214  Q
    |||  ||||||||||||| ||||||| ||||||    
T  7032321 tggtcttttacctttggatgcgcggtcgtgtgt 7032289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 11203968 - 11203844
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    |||||| || ||||||||||||| ||||| ||  | || || | ||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||    
T  11203968 tatgatttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggc 11203869  T
Q  136 gacttttgagagaccggttacctac 160  Q
    |||| ||||| || || ||||||||    
T  11203868 gactgttgagggatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 33496652 - 33496572
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||| ||||| || || ||||||||    
T  33496652 tatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggcgactgttgagggatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 12342227 - 12342340
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||| ||||| ||  | || || | |||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||| |||||    
T  12342227 tgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggtt-ctttaaaagtttctatccttgcttggcgactgttgag 12342325  T
Q  146 agaccggttacctac 160  Q
     || || ||||||||    
T  12342326 ggatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 2755991 - 2755822
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||||||| ||||||| ||||| ||||||  |||||| || | ||||||||| |||||||| |||||||| ||| | ||||| |||||  |||||||||    
T  2755991 tatgatatgttgacatcgcaggaacaacccatgttacatcaaaatatggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggc 2755892  T
Q  136 gacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcg 205  Q
    |  |  |||| |||||||||||||| |||   ||||||||||  |||||  | ||| |||||||||||||    
T  2755891 gtttgctgagggaccggttacctactaaataaaatttggcaagtcgtggggtcttatctttggaggcgcg 2755822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 7031055 - 7031146
Alignment:
Q  83 ggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttgg 174  Q
    |||||||||||||||||||||||||||| | ||| | ||||||||||||||||| || ||||| || || |||||||| |||  ||||||||    
T  7031055 ggagttaatttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 7031146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 17097877 - 17098043
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||| || || |||||||| ||||| || | | ||||||||||||||||||||||||    | | ||||| |||||| |||||| |||||| ||||     
T  17097877 tgacatcgcatgaacaaccccatttacatcaaaatgtggagttaatttggcataaacaggcatatgtgaaagtctctatctttgcttagcgactgttgat 17097976  T
Q  146 agaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgt 212  Q
     || ||||||||||| |||   ||||||||||||||||| ||| |  || ||||||| |||||||||    
T  17097977 ggatcggttacctactaaagaaaatttggcaaaccgtgggattatttctatggaggcacggttgtgt 17098043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 963154 - 963295
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    |||||||||||||| || ||||| ||||||  |||||| || | ||||||||| |||||||| |||||||| ||| | ||||| |||||  |||||||||    
T  963154 tatgatatgctgacttcgcaggaacaacccatgttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggc 963253  T
Q  136 gacttttgagagaccggttacctacgaaaagtaatttggcaa 177  Q
    |  |  |||| |||||||||||||| |||   ||||||||||    
T  963254 gtttgctgagggaccggttacctactaaacaaaatttggcaa 963295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 35214406 - 35214462
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcg 136  Q
    |||||||||||| |||||||||||||||||| | ||||| |||||||||| ||||||    
T  35214406 tatggagttaatctggcataaacaggttcctttaaaagtttctatccttgtttggcg 35214462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 16179049 - 16179009
Alignment:
Q  84 gagttaatttggcataaacaggttcctctcaaagtatctat 124  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  16179049 gagttaatttggcataaacaggtacctcttaaagtatctat 16179009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 15312723 - 15312629
Alignment:
Q  45 ctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgact 139  Q
    |||||||| ||||| ||  |||| ||||| || | | ||||||||||||||||||||||||| ||||| ||||| | |||  |||||||| ||||    
T  15312723 ctgacatcgcaggaacatacccatttacatcaaaatttggagttaatttggcataaacaggtacctctaaaagtctatatatttgcttggtgact 15312629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 19890783 - 19890733
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgc 130  Q
    |||||||||||| |||||||||||||||||| | ||||| || ||||||||    
T  19890783 tatggagttaatctggcataaacaggttcctttaaaagtttccatccttgc 19890733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 3141001 - 3140860
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||||||| | ||||| ||||| ||||||  |||||| || | ||||||||| |||||| | |||||||| ||| | ||||| |||||  |||||||||    
T  3141001 tatgatatgttcacatcgcaggaacaacccatgttacatcaaaatatggagttgatttggtacaaacaggtgcctttgaaagtgtctatatttgcttggc 3140902  T
Q  136 gacttttgagagaccggttacctacgaaaagtaatttggcaa 177  Q
       |  |||| |||||||||||||| |||   ||||||||||    
T  3140901 atttactgagggaccggttacctactaaacaaaatttggcaa 3140860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 36801110 - 36801190
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    |||||||||||||| ||||||| |||||||  | ||||| | |||||||||||||| |||  |||| || || ||||||||    
T  36801110 tatggagttaatttagcataaataggttcccttaaaagtttatatccttgcttggcaactgctgagggatcgtttacctac 36801190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 1828519 - 1828736
Alignment:
Q  24 gtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatcta 123  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1828519 gtacgtggagcctatgatatgttgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatcta 1828618  T
Q  124 tccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatg 223  Q
    ||||||||||| |||| ||| ||||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1828619 tccttgcttggagactattgcgagataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgggtg 1828718  T
Q  224 tgggaacgttgatgatgt 241  Q
    |||||| ||||| |||||    
T  1828719 tgggaatgttgaagatgt 1828736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 15740385 - 15740177
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15740385 tctgtacgtggagtctatgatatgttgacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtat 15740286  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||| |||||||| |||| ||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  15740285 ctatccttgcttggagacttttgcgagatcggttacctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtgtgtttctgg 15740186  T
Q  221 atgtgggaa 229  Q
     ||||||||    
T  15740185 gtgtgggaa 15740177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 7404077 - 7403856
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||||||||| || | |||| ||||||||||||||||||| |||| | ||||||| |    
T  7404077 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtct 7403978  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||| |||| || ||||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  7403977 ctatccttgcttggcgacttctgagggatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctgg 7403878  T
Q  221 atgtgggaacgttgatgatgtc 242  Q
    ||| ||||||||||| ||||||    
T  7403877 atgcgggaacgttgaagatgtc 7403856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 19755431 - 19755208
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||| | |||||| |||||||||||||| ||||| ||||| || || |||  |||||||||||||||||||||||||||||||||||||||||    
T  19755431 tctgtacgtggggtctatgacatgctgacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtat 19755332  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcatt---ttacctttggaggcgcggttgtgtgtttc 217  Q
    |||||||||||||||||||  ||||||| ||||||||||| |||| ||||||||||||||||| ||||   |||||||||||||||||||||||||||||    
T  19755331 ctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttc 19755232  T
Q  218 tggatgtgggaacgttgatgatgt 241  Q
    ||||||||||| |||||| |||||    
T  19755231 tggatgtgggagcgttgaagatgt 19755208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 19784375 - 19784598
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||| | |||||| |||||||||||||| ||||| ||||| || || |||  |||||||||||||||||||||||||||||||||||||||||    
T  19784375 tctgtacgtggggtctatgacatgctgacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtat 19784474  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcatt---ttacctttggaggcgcggttgtgtgtttc 217  Q
    |||||||||||||||||||  ||||||| ||||||||||| |||| ||||||||||||||||| ||||   |||||||||||||||||||||||||||||    
T  19784475 ctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttc 19784574  T
Q  218 tggatgtgggaacgttgatgatgt 241  Q
    ||||||||||| |||||| |||||    
T  19784575 tggatgtgggagcgttgaagatgt 19784598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 47685871 - 47686079
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||| ||||||| ||| || |||||||||||||| ||||| ||| |||||||||||| | |||| |||||||| |||||||||||||||||||||||||    
T  47685871 tctgttcgtggagtctacgacatgctgacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctcaaagtat 47685970  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||||||||||| ||||||||||| |||  ||||||||||||||||||||||||| || |||||| |||||| |||||||||||    
T  47685971 ctatccttgcttggcgacttttgagagatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtgtttctgg 47686070  T
Q  221 atgtgggaa 229  Q
    |||||||||    
T  47686071 atgtgggaa 47686079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 47418965 - 47418761
Alignment:
Q  24 gtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatcta 123  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  47418965 gtacgtggagtctatgatatgctgacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatcta 47418866  T
Q  124 tccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatg 223  Q
    ||||||||||||||||  |||| || ||||||||||| |||  |||||||||||  ||||||||| || ||  ||||| |||||| || ||| | |||||    
T  47418865 tccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggaggagcggttatgcgttgcaggatg 47418766  T
Q  224 tggga 228  Q
    |||||    
T  47418765 tggga 47418761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 13270867 - 13271074
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |    
T  13270867 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtct 13270966  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| || ||| ||||    
T  13270967 ctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgagttactgg 13271066  T
Q  221 atgtggga 228  Q
    ||||||||    
T  13271067 atgtggga 13271074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 23642567 - 23642774
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |    
T  23642567 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtct 23642666  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| || ||| ||||    
T  23642667 ctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctgg 23642766  T
Q  221 atgtggga 228  Q
    ||||||||    
T  23642767 atgtggga 23642774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 11587189 - 11587334
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttaca-ccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgg 134  Q
    ||||| ||||||||||||||||| || || ||||| || ||||  |||||||||||||||||||||| || | ||| ||||||||||||| |||||||||    
T  11587189 tatgacatgctgacatcacaggaacagcctcagttgcatccatc-tatggagttaatttggcataaatagatacctatcaaagtatctattcttgcttgg 11587287  T
Q  135 cgacttttgagagaccggttacctacgaaaagtaatttggcaaaccg 181  Q
    || ||| ||||  | || ||||||||||||   ||||||||||||||    
T  11587288 cggcttctgaggaatcgtttacctacgaaagaaaatttggcaaaccg 11587334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 45472744 - 45472824
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||| ||||| || || ||||||||    
T  45472744 tatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 55725677 - 55725801
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||||||| ||||||||||||| ||||| ||  |  | || | |||||||||||||||||||||||| |||||||| ||||| || |||||||||||||    
T  55725677 tatgatatgttgacatcacaggaacaacctcatgtttatcaaaatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggc 55725776  T
Q  136 gacttttgagagaccggttacctac 160  Q
    | || ||||| || || ||||||||    
T  55725777 ggctattgagggatcgcttacctac 55725801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 12697952 - 12697838
Alignment:
Q  46 tgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgag 145  Q
    ||||||||||||| ||||| ||  | || || | |||| | |||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||    
T  12697952 tgacatcacaggaacaacctcatgttcatcaaaatatgaaattaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgag 12697853  T
Q  146 agaccggttacctac 160  Q
     || || ||||||||    
T  12697852 ggatcgtttacctac 12697838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 20002830 - 20002722
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaac 179  Q
    ||||||||||||||||||||||||||||| | | ||||| |||||| |||||||||| || ||||| || || |||||||| |||   || |||||| ||    
T  20002830 tatggagttaatttggcataaacaggttcttttaaaagtttctatcattgcttggcggctgttgagggatcgtttacctactaaatccaacttggcagac 20002731  T
Q  180 cgtggcatt 188  Q
    |||||||||    
T  20002730 cgtggcatt 20002722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 8361205 - 8361146
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgact 139  Q
    ||||||||||||||||||||||||||||||  | ||||| |||||||||| |||||||||    
T  8361205 tatggagttaatttggcataaacaggttcccttaaaagtttctatccttgtttggcgact 8361146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 203
Target Start/End: Complemental strand, 46145824 - 46145657
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||||||| |||| || ||||| ||||||  |||||| || | ||||||||| |||||||| ||| |||| ||| | ||||| |||||  |||||||||    
T  46145824 tatgatatgttgacttcgcaggaacaacccatgttacatcaaaatatggagttgatttggcacaaataggtgcctttgaaagtgtctatttttgcttggc 46145725  T
Q  136 gacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcg 203  Q
    |  |  |||| ||||| |||||||| |||   ||||||||||  |||||  | ||| |||||||||||    
T  46145724 gcttgctgagggaccgattacctactaaacaaaatttggcaagtcgtggggtcttatctttggaggcg 46145657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 2822072 - 2822152
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    |||||||||||| ||||| |||||||| ||||| ||||| ||  ||| |||||||||| | ||||| || || ||||||||    
T  2822072 tatggagttaatctggcacaaacaggtacctctaaaagtttcagtccatgcttggcgattgttgagggatcgcttacctac 2822152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 5790131 - 5790171
Alignment:
Q  84 gagttaatttggcataaacaggttcctctcaaagtatctat 124  Q
    |||||||||||||||||||| || ||||| |||||||||||    
T  5790131 gagttaatttggcataaacaagtacctcttaaagtatctat 5790171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 51052644 - 51052437
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  51052644 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtat 51052545  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||| |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| |||||||||||    
T  51052544 ctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctgg 51052445  T
Q  221 atgtggga 228  Q
    ||||||||    
T  51052444 atgtggga 51052437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 11909085 - 11909288
Alignment:
Q  25 tacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctat 124  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  11909085 tacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctat 11909184  T
Q  125 ccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgt 224  Q
    | |||||||||||||| |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||| | |||||||||||||||    
T  11909185 cattgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggctatgtgtttctggatgt 11909284  T
Q  225 ggga 228  Q
    ||||    
T  11909285 ggga 11909288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 6050767 - 6050560
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |    
T  6050767 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtct 6050668  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || ||||||||||| |||  ||||||||||||  |||||||| || || |||||| |||||| || ||| ||||    
T  6050667 ctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaattgtggcattctatctgtggaggagcggttctgcgttgctgg 6050568  T
Q  221 atgtggga 228  Q
    ||||||||    
T  6050567 atgtggga 6050560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 35541213 - 35541006
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  35541213 tctgttcgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtat 35541114  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || |||||||| || |||  |||||||||||| ||||||||| || || ||||||  || || || ||| ||||    
T  35541113 ctatccttgcttggcgactactgagggatcggttacccacaaaacataatttggcaaatcgtggcattctatctgtggaggaacgattatgcgttgctgg 35541014  T
Q  221 atgtggga 228  Q
    ||||||||    
T  35541013 atgtggga 35541006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 212
Target Start/End: Original strand, 47623068 - 47623244
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacac-catagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgg 134  Q
    ||||| ||||||||||||||||| ||||| ||||||||  |||| |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||    
T  47623068 tatgacatgctgacatcacaggaacaacctcagttacattcata-tatggaattaatttggcataaacaggtacctctcaaagtatctattcttgcttgg 47623166  T
Q  135 cgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgt 212  Q
    || |||||||| ||||| |||||||||||  | |||||||||||||||| |||| | ||| |||||| ||||||||||    
T  47623167 cggcttttgagggaccgcttacctacgaagggaaatttggcaaaccgtgacattattcctatggaggggcggttgtgt 47623244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 16917844 - 16917938
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttgg 174  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||| || || |||||||| |||  ||||||||    
T  16917844 tatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 16917938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 43388472 - 43388392
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| | ||||| || || ||||||||    
T  43388472 tatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgattgttgagggatcgtttacctac 43388392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 37191245 - 37191325
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    |||||||||||| |||||||||| ||||| | | ||||| | ||||||||||||||| || |||||||| || ||||||||    
T  37191245 tatggagttaatctggcataaactggttcatttaaaagtttatatccttgcttggcggctgttgagagatcgattacctac 37191325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 28351862 - 28351776
Alignment:
Q  37 atgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatcta 123  Q
    |||| ||| ||||||||| |||| | ||||| | ||| || | ||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  28351862 atgacatgttgacatcactggagtatccccattcacatcaaaatatggagttaatttggcataaaccggtccctctgaaagtctcta 28351776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 22191823 - 22191875
Alignment:
Q  87 ttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgact 139  Q
    |||||||||||||||||||||||| | || || ||||| ||||||||| ||||    
T  22191823 ttaatttggcataaacaggttcctttgaaggtttctattcttgcttggagact 22191875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 4552333 - 4552126
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||| |||||||    
T  4552333 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtat 4552234  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||| |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| |||||||||||    
T  4552233 ctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctgg 4552134  T
Q  221 atgtggga 228  Q
    ||||||||    
T  4552133 atgtggga 4552126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 36 - 242
Target Start/End: Complemental strand, 41207165 - 41206959
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||| ||||||||||| ||||| || || |||||||| |  | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41207165 tatgacatgctgacatcgcaggaacatcctcagttacatccaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggc 41207066  T
Q  136 gacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttga 235  Q
    | ||| |||| || ||||||||||| |||| |||||||||||| ||||||||| | || ||||||||||||||||||||  ||||||| ||| |||||||    
T  41207065 ggcttctgagggatcggttacctacaaaaaataatttggcaaatcgtggcattattcccttggaggcgcggttgtgtgtcactggatgcgggcacgttga 41206966  T
Q  236 tgatgtc 242  Q
     ||||||    
T  41206965 agatgtc 41206959  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 28252869 - 28252679
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacac-catagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgg 134  Q
    ||||| ||||||||||||||||| || || ||||||||  |||  |||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  28252869 tatgacatgctgacatcacaggaacagcctcagttacattcatc-tatggaattaatttggcataaacaggtacctctaaaagtatctattcttgcttgg 28252771  T
Q  135 cgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgg 226  Q
    || |||||||| || || |||||||||||  | ||||||||||||| ||||||| | | | |||||| |||||| |||||||| || |||||    
T  28252770 cggcttttgagggatcgcttacctacgaagggaaatttggcaaaccatggcattattcatatggaggggcggttatgtgtttccggttgtgg 28252679  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 214
Target Start/End: Original strand, 17764997 - 17765131
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaac 179  Q
    |||||||||||| ||||||||||||| |||||| ||||| ||||| ||||||||||| || ||||| || |  ||||||||||||   ||||||||||||    
T  17764997 tatggagttaatatggcataaacaggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctacgaaagcaaatttggcaaac 17765096  T
Q  180 cgtggcattttacctttggaggcgcggttgtgtgt 214  Q
    ||||| ||  | |||||||||||||||||||||||    
T  17765097 cgtggtatcattcctttggaggcgcggttgtgtgt 17765131  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 241
Target Start/End: Complemental strand, 15917755 - 15917598
Alignment:
Q  84 gagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtg 183  Q
    |||||||||| ||||||| |||||||||| ||||| | ||||||||||||| ||||  |||| || || |||||||| |||  |||||||||||| ||||    
T  15917755 gagttaatttcgcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatttggcaaatcgtg 15917656  T
Q  184 gcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgatgatgt 241  Q
    | ||| | |||||||| | ||||||||||||  |||| |||||| | ||||| |||||    
T  15917655 gtattattcctttggaagtgcggttgtgtgtcactggttgtgggcatgttgaagatgt 15917598  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 241
Target Start/End: Complemental strand, 12645641 - 12645480
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaac 179  Q
    |||||||||||||||||||||||||||| |||| ||||| || |||||||||||||| || ||||| || || |||||||| |||   |||||| || |     
T  12645641 tatggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttgacagat 12645542  T
Q  180 cgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgatgatgt 241  Q
    ||  | ||| ||||||||||||| ||||| |||||| | || |||||| | ||||| |||||    
T  12645541 cgcagaattctacctttggaggctcggttttgtgttacagggtgtgggcatgttgaagatgt 12645480  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 14439857 - 14439777
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagaccggttacctac 160  Q
    |||||||||||| |||||||||||||||||| | ||||| |||||| | ||||| ||||| ||||| || || ||||||||    
T  14439857 tatggagttaatctggcataaacaggttcctttaaaagtttctatcttggcttgacgactgttgagggatcgtttacctac 14439777  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 38604365 - 38604489
Alignment:
Q  36 tatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 135  Q
    ||||| ||| ||||||||||||| |||||  | || || || | |||||||||||| ||||||||||| || ||||| ||||| || |||||||| ||||    
T  38604365 tatgacatgttgacatcacaggaacaacctaattttcatcaaaatatggagttaatctggcataaacaagtacctctaaaagtttcaatccttgcatggc 38604464  T
Q  136 gacttttgagagaccggttacctac 160  Q
      || || ||||| || ||||||||    
T  38604465 tgctgttaagagatcgtttacctac 38604489  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 10999986 - 11000040
Alignment:
Q  80 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgg 134  Q
    |||||||||||| || |||||||||||| || | ||||| |||||||||||||||    
T  10999986 tatggagttaatctgccataaacaggtttctttaaaagtttctatccttgcttgg 11000040  T

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Target: scaffold0369 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 11186 - 11389
Alignment:
Q  26 acgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatc 125  Q
    |||||||| |||||| ||||||||||||||||||||  ||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||    
T  11186 acgtggagtctatgacatgctgacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatc 11285  T
Q  126 cttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtg 225  Q
    ||||||||||||||| | || || ||||||||||| |||  |||||||||||||||||||||| || || |||||| |||||| ||||||||||||||||    
T  11286 cttgcttggcgacttctcagggatcggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcggttatgtgtttctggatgtg 11385  T
Q  226 ggaa 229  Q
    ||||    
T  11386 ggaa 11389  T

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Target: scaffold0034 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 105819 - 106026
Alignment:
Q  21 tctgtacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtat 120  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |    
T  105819 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtct 105918  T
Q  121 ctatccttgcttggcgacttttgagagaccggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 220  Q
    |||||||||||||||||||  |||| || ||||||||||| |||  |||||||||||| ||||||||| || || |||||| |||||| || ||| ||||    
T  105919 ctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctgg 106018  T
Q  221 atgtggga 228  Q
    ||||||||    
T  106019 atgtggga 106026  T

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