View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13698_high_25 (Length: 248)
Name: NF13698_high_25
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 51845300 - 51845092
Alignment:
| Q |
21 |
tatcttgtccggatccatcgctaggtggtgacgttaaatccgaagaaggatcgcatgctttgtcaagtggcttcccacaaagctcttcatttcctgcaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51845300 |
tatcttgtccggatccatcgctaggtggtgacgttaaatccgaagaaggatcgcatgctttgtcaagtggcttcccacaaagctcttcatttcctgcaaa |
51845201 |
T |
|
| Q |
121 |
agattttgcctcatacttggacaagggaccaggtattgcaccttgtaacttgttgttagacacgtctaaagatttaatatcttgtttgaattctggaata |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51845200 |
agattttgcctcatacttggacaagggaccaggtattgcaccttgtaacttgttgttagacatgtctaaagatttaatatcttgtttgaattctggaata |
51845101 |
T |
|
| Q |
221 |
ggaccagag |
229 |
Q |
| |
|
||||||||| |
|
|
| T |
51845100 |
ggaccagag |
51845092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University