View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13698_high_26 (Length: 240)
Name: NF13698_high_26
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_high_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9112301 - 9112075
Alignment:
| Q |
1 |
tgcatcctctgcagcagctatcaagaattcaaattatatgtatata----attcaagtatatggtacatatgtgtgtatgtgtaaatattatggttgatc |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9112301 |
tgcatcctctgcagcagctatcaagaattcaaattatatgtatatatataattcaagtatatggtacatatgtgtgtatgtgtatatattatggttgatc |
9112202 |
T |
|
| Q |
97 |
ctcgtaagaaaataataannnnnnnnnnnnnnnnnnnnngatgatagacatatcaaggagtccagatcactcttgtagttcaatccaagcaaaattgttt |
196 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9112201 |
ctcgtaagaaaataataatttgttttgtttttcctttttgatgatagacatatcaaggagtccagatcattcttgtagttcaatccaagcaaaattgttt |
9112102 |
T |
|
| Q |
197 |
ataaattgcttaattaacatatattct |
223 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
9112101 |
ataaattgcttaattaacatatattct |
9112075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University