View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_high_29 (Length: 228)
Name: NF13698_high_29
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_high_29 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 10222344 - 10222567
Alignment:
| Q |
5 |
caataaaggccattgctttattcctcatgagactaagaaacttcttagggttgaactttggtaattcacactcttttggactccacctccaataaaggta |
104 |
Q |
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| T |
10222344 |
caataaaggccattgctttattcctcatgagactaagaaacttcttagggttgaactttggtaattcacactcttttggactccacctccaataaaggta |
10222443 |
T |
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| Q |
105 |
ccctaaatcaggtcttccatttttcatacaattttgatgaggttcaatcacatgacaactctcatttgtgtacattggttcagattgatcagaaatccaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10222444 |
ccctaaatcaggtcttccatttttcatacaattttgatgaggttcaatcacatgacaactctcatttgtgtagattggttcagattgatcagaaatccaa |
10222543 |
T |
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| Q |
205 |
tctcccacaaaaaggtcacatttt |
228 |
Q |
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|||||||||||||||||||||||| |
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| T |
10222544 |
tctcccacaaaaaggtcacatttt |
10222567 |
T |
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