View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13698_high_5 (Length: 488)
Name: NF13698_high_5
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 27852079 - 27852537
Alignment:
| Q |
18 |
tttttaaaccaactccaaaggcaagtatacatcataaacatgtgctgcatggcaagagtatcttgctgccaaatgatacaacattagtttaattcaatta |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27852079 |
tttttagaccaactccaaaggcaagtatacatcataaacatgtgctgcatggcaagagtatcttgctgccaaatgatacaacattagtttaattcaatta |
27852178 |
T |
|
| Q |
118 |
ggtcatagagaaatgaattaaaactatatatagagtatacattagcctaactaaagaccattatataatcttatgcacaatttatattttttgtcatatc |
217 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27852179 |
ggttataaagaaatgaattaaaactatatatagagtatacattagcctaactaaagaccattatataatcttatgcacaatttat-gtttttgtcatatc |
27852277 |
T |
|
| Q |
218 |
ttaggactaaaatatgtttggtccaaaaatagagactaaattatgagaatcttgacaaaatctgtgagtacacagtatgagtctatgagaggagtttgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27852278 |
ttaggactaaaatatgtttggtccaaaaatagagactaaattatgagaatcttgacaaaatctgtgagtacacagtatgagtctatgagaggagtttgaa |
27852377 |
T |
|
| Q |
318 |
gtttacccaaaatgccaaagaatttgactcgtattttc--cacactttagtcataaaaggtgattaataaggaaagggcttgattattcagaatttgtgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
27852378 |
gtttacccaaaatgccaaagaatttgactcgtattttccacacactttaatcacaaaaggtgattaataagg-aagggtttgataattcagaatttgtgt |
27852476 |
T |
|
| Q |
416 |
tatgtaattaacatttatcacatcatcacatacgcataacgaatatagaccacacaggttc |
476 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27852477 |
tatttaattaacatttatcacatcatcacatacgcataacgaatatagaccacacaggttc |
27852537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University