View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_high_8 (Length: 455)
Name: NF13698_high_8
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 3387693 - 3388121
Alignment:
| Q |
10 |
aagaaaatacttaggaatttaaagggagaaaaccaaagtacaaaaagggtacaaatgtttgattttctggccgtcatgtttggaaccgcctcaactattt |
109 |
Q |
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| T |
3387693 |
aagaaaatacttaggaatttaaagggagaaaaccaaagtacaaaaagggtacaaatgtttgattttctggccgtcatgtttggaaccgcctcaactattt |
3387792 |
T |
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| Q |
110 |
tgtgggattatgtatgtgtggccatattcttatagttttttgttgattttaatttggttaaatgggggtaacgttaattcaaatccaccgaaatggtcac |
209 |
Q |
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| T |
3387793 |
tgtgggattatgtatgtgtggccatattcttatagttttttgttgattttaatttggttaaatgggggtaacgttaattcaaatccaccgaaatggtcac |
3387892 |
T |
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| Q |
210 |
tcctcccccattaatttttgggggaaagaaacaggctgcttccttgagataattcaggagaaattgattttggagattaagaaatctatggtttgtctat |
309 |
Q |
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| T |
3387893 |
tcctcccccattaatttttgggggaaagaaacaggctgcttccttgagataattaaggagaaattgattttggagattaagaaatctatggtttgtctat |
3387992 |
T |
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| Q |
310 |
cttatgcaatgttgaatagattaaaacaattaaaataatannnnnnnaaaaggttttgttaacaagtgttctaaagacattgtttaagaagtctataaaa |
409 |
Q |
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| T |
3387993 |
cttatgcaacgttgcatagattaaaacaattaaaataatatttttttaaaaggttttgttaacaagtgttctagaaatattgtttaagaagtctataaaa |
3388092 |
T |
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| Q |
410 |
ggaag-ttttatcttaaaagggtctgatt |
437 |
Q |
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| T |
3388093 |
ggaagtttttatcttaaaagggtctgatt |
3388121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 30531485 - 30531546
Alignment:
| Q |
365 |
ttgttaacaagtgttctaaagacattgtttaagaagtctataaaaggaagttttatcttaaaa |
427 |
Q |
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| T |
30531485 |
ttgttaacaaatgttctaaagatattgtttaagaaatttataata-aaagttttatcttaaaa |
30531546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 33012589 - 33012635
Alignment:
| Q |
363 |
ttttgttaacaagtgttctaaagacattgtttaagaagtctataaaa |
409 |
Q |
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| T |
33012589 |
ttttgctaacaagtgttctaaagacattgtttaaagaatctataaaa |
33012635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 399
Target Start/End: Complemental strand, 54260074 - 54260041
Alignment:
| Q |
366 |
tgttaacaagtgttctaaagacattgtttaagaa |
399 |
Q |
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| T |
54260074 |
tgttaaaaagtgttctaaagacattgtttaagaa |
54260041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 27214078 - 27214046
Alignment:
| Q |
365 |
ttgttaacaagtgttctaaagacattgtttaag |
397 |
Q |
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| T |
27214078 |
ttgttaacaagtgttctaaggacattgtttaag |
27214046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 9632808 - 9632768
Alignment:
| Q |
357 |
aaaaggttttgttaacaagtgttctaaagacattgtttaag |
397 |
Q |
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| T |
9632808 |
aaaaggttatgctaacaaatgttctaaagacattgtttaag |
9632768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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