View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_low_13 (Length: 370)
Name: NF13698_low_13
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 4097789 - 4097438
Alignment:
| Q |
19 |
aattgatcataatcatcaaatactaaagagactttccacatttctcaaatcacaacccaaccatacaaaaagacttaaaatggtgtataaaacaagaaag |
118 |
Q |
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| T |
4097789 |
aattgatcataatcatcgaatactaaagagactttccacatttctcaaatcacaacccaaccatacaaaaagacttaaaatggtgtataaaacaacaaag |
4097690 |
T |
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| Q |
119 |
gcttttacagattatgatatgaaagttttagaacttatctacaggtacaccatctcttgaaacatcatatgcttccctactccttgttttcttcatgcca |
218 |
Q |
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| T |
4097689 |
gcttttacagattatcatatgaaagttttagaacttatctacaggtacaccatctcttgtaacatcatatgcttccctactccttgttttcttcatgcca |
4097590 |
T |
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| Q |
219 |
gcagtgacatagagctttgatccctcggagaaaatggttgtgacttttacccagataattacttttgtcttcattccctcgatgtctgctagctttcctt |
318 |
Q |
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| T |
4097589 |
gcagtcacatagagctttgatccctcggagaaaatggttgtcacttttacccagataattacttttgtcttcattccctcgatgtctgctagctttcctt |
4097490 |
T |
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| Q |
319 |
tctccagataaccagtaacggtggtgaagaaacgcaagacggatgaatcctt |
370 |
Q |
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| T |
4097489 |
tctccagataaccagtaacggtggtgaagaaacgcaagacggatgaatcctt |
4097438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 146 - 367
Target Start/End: Original strand, 25796528 - 25796749
Alignment:
| Q |
146 |
ttagaacttatctacaggtacaccatctcttgaaacatcatatgcttccctactccttgttttcttcatgccagcagtgacatagagctttgatccctcg |
245 |
Q |
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| T |
25796528 |
ttagaatttatctataattacaccatctctagaaacttcataagcttcccttttccttgttttcttcatgccagcagtgaagttcagctttggtccctcg |
25796627 |
T |
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| Q |
246 |
gagaaaatggttgtgacttttacccagataattacttttgtcttcattccctcgatgtctgctagctttcctttctccagataaccagtaacggtggtga |
345 |
Q |
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| T |
25796628 |
gatgaaatggcggtaactttcacccacaccaacactttggtcttcataccctctatatcagctagctttcctttctccaagtaaccagaaacagtggttg |
25796727 |
T |
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| Q |
346 |
agaaacgcaagacggatgaatc |
367 |
Q |
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| T |
25796728 |
tgaagcgcaagactgatgaatc |
25796749 |
T |
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