View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13698_low_17 (Length: 311)

Name: NF13698_low_17
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13698_low_17
NF13698_low_17
[»] chr3 (3 HSPs)
chr3 (10-243)||(38556878-38557107)
chr3 (10-243)||(2010104-2010338)
chr3 (37-96)||(20000526-20000585)
[»] chr2 (5 HSPs)
chr2 (11-243)||(36363572-36363805)
chr2 (48-236)||(21553124-21553313)
chr2 (37-244)||(42493912-42494123)
chr2 (40-243)||(42556129-42556334)
chr2 (36-243)||(38608625-38608834)
[»] chr4 (5 HSPs)
chr4 (11-244)||(47744708-47744942)
chr4 (14-244)||(22465727-22465958)
chr4 (37-244)||(20634836-20635046)
chr4 (37-97)||(16738910-16738970)
chr4 (57-96)||(40286992-40287031)
[»] chr1 (4 HSPs)
chr1 (37-244)||(28080469-28080682)
chr1 (22-184)||(43656893-43657057)
chr1 (89-241)||(41085965-41086118)
chr1 (89-236)||(41090738-41090886)
[»] chr8 (1 HSPs)
chr8 (59-246)||(33932979-33933165)
[»] chr6 (1 HSPs)
chr6 (14-247)||(23250128-23250361)
[»] chr7 (3 HSPs)
chr7 (10-75)||(47404487-47404552)
chr7 (149-241)||(10042018-10042110)
chr7 (209-244)||(47404437-47404472)
[»] chr5 (1 HSPs)
chr5 (51-90)||(21484728-21484767)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 38556878 - 38557107
Alignment:
Q  10 gcacagagaaggagtagccaattctgctaatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaa 109  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||    
T  38556878 gcacagagaaggagtagccaattctgctaatgggtctggacatctatagagagggccattaggtcaagaaagtgatgactataaaagatgacacttaaaa 38556977  T
Q  110 agcaagaggatagattcattctagcctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatct 209  Q
    |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38556978 agcaagaggat----tcattctagcctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggcagctccactgaatatct 38557073  T
Q  210 catctattgtaattcatgtttacatacgtgaaca 243  Q
    ||||||||||||||||||||||||||||||||||    
T  38557074 catctattgtaattcatgtttacatacgtgaaca 38557107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 2010338 - 2010104
Alignment:
Q  10 gcacagagaaggagtagccaattctgctaatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  2010338 gcacagagaaggagtagccaattctgctaatgggcctggacatccatagagagacccattaggtcaagaaagtgatgactataaaggatggcacttagaa 2010239  T
Q  110 agcaaga-ggatagattcattctagcctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatc 208  Q
    ||||||| ||    |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||  ||||||   |||||||    
T  2010238 agcaagagggggtcattcattctagcctac-cattgtattttcatcttagtcattttagagtattcatggagctcctcatagacagctcctaagaatatc 2010140  T
Q  209 tcatctattgt-aattcatgtttacatacgtgaaca 243  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2010139 tcatctattgtaaattcatgtttacatacgtgaaca 2010104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 20000526 - 20000585
Alignment:
Q  37 taatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaag 96  Q
    |||||||| || ||||| | ||| |||||||||||||||||||||||||| |||||||||    
T  20000526 taatgggcatgtacatccaaagaaaggcccattaggtcaagaaagtgatgcctataaaag 20000585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 36363572 - 36363805
Alignment:
Q  11 cacagagaaggagtagccaattctgctaatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaa 110  Q
    ||||||||||||||| |||||  |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  36363572 cacagagaaggagtaaccaatattgctaatgggcctggacatccatagagaggcccattaggtcaagaaaatgatgactataaaagagggcacttagaaa 36363671  T
Q  111 gcaagagg-atagattcattctagcctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatct 209  Q
    |||||||| || ||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36363672 gcaagagggatggattatttctagcctatacattgtattttcaccttagtcattttagagtattcttggagctcctcataggcagctccactgaatatct 36363771  T
Q  210 catctattgtaattcatgtttacatacgtgaaca 243  Q
    ||||||||||||||||||||||||||||||||||    
T  36363772 catctattgtaattcatgtttacatacgtgaaca 36363805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 21553313 - 21553124
Alignment:
Q  48 gacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaagcaagagg-atagattcattctagcctacacattgta 146  Q
    |||||| | |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||| |||||||||| |||||| ||| ||    
T  21553313 gacatccaaagagaggctcattaggtcaagaaactgatgactataaaagatggtacttagaaagcaagggggatacattcattctaacctacatatttta 21553214  T
Q  147 ttttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatctcatctattgtaattcatgtttacatac 236  Q
    |||| ||| |||||||||||||||||||||||| ||||  ||||| ||||||| |||||  |||||||||||||||||||||||||||||    
T  21553213 ttttgaccctagtcattttagagtattcttggaactccgaataggaagctccattgaatgcctcatctattgtaattcatgtttacatac 21553124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 37 - 244
Target Start/End: Complemental strand, 42494123 - 42493912
Alignment:
Q  37 taatgggcctggacatctata-gagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaagcaagagg---atagattcattcta 132  Q
    ||||||||||| ||||| | | |||||||| |||||||||||||||||| | |||||||||  | |||||| ||||||  |||   ||  ||| ||| ||    
T  42494123 taatgggcctgaacatccaaaagagaggcctattaggtcaagaaagtgaggcctataaaaggagacacttaaaaagcagtagggggattaattgatttta 42494024  T
Q  133 gcctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatctcatctattgtaattcatgtttac 232  Q
    | ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||  | ||||||| ||||||| ||||||||||||||||||||||    
T  42494023 ggctaaacattgtatttttaccttagtcattttagagtattcttggagctcctcatagacaactccactaaatatctaatctattgtaattcatgtttac 42493924  T
Q  233 atacgtgaacaa 244  Q
    ||||||||||||    
T  42493923 atacgtgaacaa 42493912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 42556334 - 42556129
Alignment:
Q  40 tgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaagcaagagg--atagattcattctagccta 137  Q
    |||||| ||||||||| |||||| ||| |||||| ||||||||||||||||||||| ||| ||||| |||||||| |||  ||  ||||||||| || ||    
T  42556334 tgggccgggacatctaaagagagaccctttaggttaagaaagtgatgactataaaaaatgacacttggaaagcaaaaggggatccattcattctggcgta 42556235  T
Q  138 cacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatctcatctattgtaattcatgtttacatacg 237  Q
     ||||||||||| ||||||||| ||||| |||| ||||||||||||||| |||   | |||| |||||| |||||||||||||| |  |||||||||| |    
T  42556234 aacattgtatttccaccttagtgattttggagtgttcttggagctcctcctagaacgatccattgaataactcatctattgtaacttgtgtttacatatg 42556135  T
Q  238 tgaaca 243  Q
    ||||||    
T  42556134 tgaaca 42556129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 243
Target Start/End: Complemental strand, 38608834 - 38608625
Alignment:
Q  36 ctaatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaagcaagag--gatagattcattctag 133  Q
    ||||||||| |||||||| | ||||||   ||||||||||||||||||||||||||||||||| |||||||||| |||||||  |||  ||||||| |||    
T  38608834 ctaatgggcttggacatccaaagagagtttcattaggtcaagaaagtgatgactataaaagatagcacttagaatgcaagagaagatccattcattatag 38608735  T
Q  134 cctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatctcatctattgtaattcatgtttaca 233  Q
    |||| | ||  | ||||||||||||| ||||||||||||||||| |||||||| |||  || |||| |||||| |||   |||||||| |  | ||||||    
T  38608734 cctaaatatgatcttttcaccttagttattttagagtattcttgaagctcctcctagaaagttccattgaatagctcggatattgtaacttgtatttaca 38608635  T
Q  234 tacgtgaaca 243  Q
    ||||||||||    
T  38608634 tacgtgaaca 38608625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 47744942 - 47744708
Alignment:
Q  11 cacagagaaggagtagccaattctgctaatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaa 110  Q
    ||||||||||||||| |||||  |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  47744942 cacagagaaggagtaaccaatattgctaatgggcctggacatccatagagaggcccattaggtcaagaaaatgatgattataaaagagggcacttagaaa 47744843  T
Q  111 gcaagagg-atagattcattctagcctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatct 209  Q
    |||||||| || ||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47744842 gcaagagggatggattatttctagcctatacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatct 47744743  T
Q  210 catctattgtaattcatgtttacatacgtgaacaa 244  Q
    ||||||||||||||||| |||||||||||||||||    
T  47744742 catctattgtaattcatatttacatacgtgaacaa 47744708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 22465958 - 22465727
Alignment:
Q  14 agagaaggagtagccaattctgctaatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaagca 113  Q
    ||||||||||||||||||| |||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  22465958 agagaaggagtagccaattatgctaatgggcctggacatccaaagagagacccaataggtcaagaaagtgatgactataaaagatgacacttagaaagca 22465859  T
Q  114 agagg-atagattcattctagcctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatctcat 212  Q
    ||||| ||  ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |||||| || ||||||||||    
T  22465858 agagggattcattcattttagcctacacattgtattttcaccttattcattttagagtattcttggagctcttcgtaggcagctccgctaaatatctcat 22465759  T
Q  213 ctattgtaattcatgtttacatacgtgaacaa 244  Q
     |||||||||||||||||||||||||||||||    
T  22465758 ttattgtaattcatgtttacatacgtgaacaa 22465727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 20634836 - 20635046
Alignment:
Q  37 taatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaagca--agaggatag-attcattctag 133  Q
    ||||||||||||||||||| |  || ||||||||||||| |||||||| |  ||||||||  | ||| |||| || |  || ||||   |||||||||||    
T  20634836 taatgggcctggacatctaaaaggatgcccattaggtcaggaaagtgaagcttataaaaggagacacctagagagaataaggggattccattcattctag 20634935  T
Q  134 cctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatctcatctattgtaattcatgtttaca 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  20634936 cctacacattgtattttcaccttagtcattttagagtattcttggagctacttttaggcagctccagtgaatatttcatctattgtaattcatgtttaca 20635035  T
Q  234 tacgtgaacaa 244  Q
    |||||||||||    
T  20635036 tacgtgaacaa 20635046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 16738970 - 16738910
Alignment:
Q  37 taatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaaga 97  Q
    ||||| ||||| ||||| | |||||||||||||||||||||||||||| | ||||||||||    
T  16738970 taatgagcctgaacatccaaagagaggcccattaggtcaagaaagtgaggcctataaaaga 16738910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 40287031 - 40286992
Alignment:
Q  57 agagaggcccattaggtcaagaaagtgatgactataaaag 96  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  40287031 agagaggcccattaggtcaagaaagtgaggcctataaaag 40286992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 28080469 - 28080682
Alignment:
Q  37 taatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaagc------aagaggatagattcattc 130  Q
    ||||||||||| ||||  | ||||||||||||||||||||| ||||||||  ||||||||| | |||||||||||       ||| || |  ||||||||    
T  28080469 taatgggcctgaacattcacagagaggcccattaggtcaaggaagtgatgcatataaaagaagacacttagaaaggcataaaaagggggtccattcattc 28080568  T
Q  131 tagcctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatctcatctattgtaattcatgttt 230  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||||||||| |||||||||||||||| ||||||    
T  28080569 tagcctaaacattgtatcttcaccttagtcattttagagtattcttggtgctcctcataagcagctccactgaataactcatctattgtaatttatgttt 28080668  T
Q  231 acatacgtgaacaa 244  Q
    ||||||||||||||    
T  28080669 acatacgtgaacaa 28080682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 43657057 - 43656893
Alignment:
Q  22 agtagccaattctgctaatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaagcaaga-ggat 120  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || |    
T  43657057 agtagccaattctgctaatgggccttgacatccatagaaaggcccattagatcaagaaagtgatgactataaaagatggcacttggaaagcaagaggggt 43656958  T
Q  121 agattcattctagcctacacattgtat-tttcaccttagtcattttagagtattcttggagctcc 184  Q
      ||||||||||||||||||||| |||  || |||||| |||||||||||||||||| |||||||    
T  43656957 tcattcattctagcctacacattatatcctttaccttattcattttagagtattcttagagctcc 43656893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 241
Target Start/End: Complemental strand, 41086118 - 41085965
Alignment:
Q  89 tataaaagatggcacttagaaagcaagagg-atagattcattctagcctacacattgtattttcaccttagtcattttagagtattcttggagctcctca 187  Q
    ||||||| || |||||||||||||||| || ||  ||||||||||||||||| ||| |||||||| |||| |||||||||||||||||| ||  ||||||    
T  41086118 tataaaatattgcacttagaaagcaagggggattcattcattctagcctacatattatattttcatcttaatcattttagagtattctttgaaatcctca 41086019  T
Q  188 taggtagctccactgaatatctcatctattgtaattcatgtttacatacgtgaa 241  Q
    |||  ||||| |||||||| ||||||||||||||||||||||||||||| ||||    
T  41086018 tagacagctcaactgaatacctcatctattgtaattcatgtttacatacatgaa 41085965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 41090886 - 41090738
Alignment:
Q  89 tataaaagatggcacttagaaagcaagagg-atagattcattctagcctacacattgtattttcaccttagtcattttagagtattcttggagctcctca 187  Q
    ||||||| || |||||||||||||||| || ||  ||||||||||||||||| ||| |||||||| |||| |||||||||||||||||| ||  ||||||    
T  41090886 tataaaatattgcacttagaaagcaagggggattcattcattctagcctacatattatattttcatcttaatcattttagagtattctttgaaatcctca 41090787  T
Q  188 taggtagctccactgaatatctcatctattgtaattcatgtttacatac 236  Q
    |||  ||||| |||||||| |||||||||||||||||||||||||||||    
T  41090786 tagacagctcaactgaataactcatctattgtaattcatgtttacatac 41090738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 59 - 246
Target Start/End: Complemental strand, 33933165 - 33932979
Alignment:
Q  59 agaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaagcaagaggatagattcattctagcctacacattgtattttcaccttag 158  Q
    |||||||||||||||||||||||||  | ||| |||||  | ||| |||| || |||   || ||||||||||||| ||  |||||| ||||||||||||    
T  33933165 agaggcccattaggtcaagaaagtggggcctacaaaaggagacacctagagag-aagtaaatggattcattctagcttaaccattgtgttttcaccttag 33933067  T
Q  159 tcattttagagtattcttggagctcctcataggtagctccactgaatatctcatctattgtaattcatgtttacatacgtgaacaata 246  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  33933066 tcattttagagtattcttagagctcctcataggaagctccactgaatagctcatctattgtaattcatgtttacatacacgaacaata 33932979  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 23250128 - 23250361
Alignment:
Q  14 agagaaggagtagccaattctgctaatgggcctggacatctatagagaggcccattaggtcaagaaagtgatgactataaaagatggcacttagaaagca 113  Q
    |||||||||||||| || ||  |||||| |  | |||||||| ||||| ||| |||||||||||||| ||||  | |||||||| | || ||| ||  ||    
T  23250128 agagaaggagtagcaaaatccactaatgagtgtagacatctaaagagaagcc-attaggtcaagaaaatgatagcaataaaagaggacatttataacaca 23250226  T
Q  114 agagg-atagattcattctagcctacacattgtattttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatctcat 212  Q
    || || ||  |||||||||||| || |||||||||||| |||||||||||||||||||||||||  ||||||||| | | ||||| |||||||| |||||    
T  23250227 agggggattcattcattctagcttaaacattgtattttaaccttagtcattttagagtattcttaaagctcctcacatgcagctctactgaatagctcat 23250326  T
Q  213 ctattgtaattcatgtttacatacgtgaacaatat 247  Q
    |||||||||||||||||||||||||||||| ||||    
T  23250327 ctattgtaattcatgtttacatacgtgaacgatat 23250361  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 47404552 - 47404487
Alignment:
Q  10 gcacagagaaggagtagccaattctgctaatgggcctggacatctatagagaggcccattaggtca 75  Q
    |||||||||||||||| |||||||| ||||||||||||||||||  ||||||| ||||||||||||    
T  47404552 gcacagagaaggagtatccaattctactaatgggcctggacatccgtagagagacccattaggtca 47404487  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 10042018 - 10042110
Alignment:
Q  149 ttcaccttagtcattttagagtattcttggagctcctcataggtagctccactgaatatctcatctattgtaattcatgtttacatacgtgaa 241  Q
    |||| |||||||||||||||||||| |||||| | ||  |||| || |||||| | || ||||| |||||||| |  ||||||||||||||||    
T  10042018 ttcatcttagtcattttagagtatttttggagtttcttttaggaagttccactaattagctcatatattgtaacttgtgtttacatacgtgaa 10042110  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 47404472 - 47404437
Alignment:
Q  209 tcatctattgtaattcatgtttacatacgtgaacaa 244  Q
    |||||||||||||||||||||||| |||||||||||    
T  47404472 tcatctattgtaattcatgtttacttacgtgaacaa 47404437  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 21484767 - 21484728
Alignment:
Q  51 atctatagagaggcccattaggtcaagaaagtgatgacta 90  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  21484767 atctaaagagaggcccattaggtcaagaaagtgaggacta 21484728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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