View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_low_18 (Length: 306)
Name: NF13698_low_18
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 42099740 - 42099461
Alignment:
| Q |
13 |
tcatcacctccgttcccatatcatcaagaaccttctcagaagcaatttcagaaaacactttatcacaattcatagcaatagtttccaacaaatcaagact |
112 |
Q |
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| T |
42099740 |
tcatcacctccgttcacatatcatcaagaaccttctcagaagcaatttcagaaaacactttatcacaattcatagcaacagtttccaacaaatcaagact |
42099641 |
T |
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| Q |
113 |
atgtttctgaacaacaagactcttatgattaatctttctcttaataactttcacaatttctgaaccgttaaactctttcacgttaataagaccacaaatt |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42099640 |
atgtttctgaacaacaggactcttatgattaatctttctcttaataactttcacaatttctgaaccgttaaactctttcgcgttaataagaccacaaatt |
42099541 |
T |
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| Q |
213 |
ctgagattcatgccccaatttgttccgatatagtttctgatgttgcttcgtcgaccattttggattcaggtgttggtgtt |
292 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42099540 |
ctgagattcatgccccaatttgttccgataaagtttccgatgttgcttcgtcgaccattttggattcaggtgttggtgtt |
42099461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 28 - 288
Target Start/End: Original strand, 38957596 - 38957857
Alignment:
| Q |
28 |
ccatatcatcaagaaccttctcagaagcaatttcagaaaacactttatcacaattcatagcaatagtttccaacaaatcaagactatgtttctgaacaac |
127 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |
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| T |
38957596 |
ccatatcatcaagaaccttctcagaagcaatttccgaaaacactttatcacaattcatagcacaagtctccaacaaatcaaggctatgtttctgaacaat |
38957695 |
T |
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| Q |
128 |
aagactcttatgattaatctttctcttaataactttcacaatttctgaaccgttaaactctttcacgttaataagaccacaaattctgagattcatgccc |
227 |
Q |
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| T |
38957696 |
aggactcttatgattgatctttctcttaatagctttcactatttcagaaccgttaaactcttcggcattaataaggccgcagattctgagattcataccc |
38957795 |
T |
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| Q |
228 |
caattt-gttccgatatagtttctgatgttgcttcgtcgaccattttggattcaggtgttgg |
288 |
Q |
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|||||| |||| |||| |||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
38957796 |
caatttggttcagataaagtttcggatgttgcttcgtcgacaattttggattcaggtgttgg |
38957857 |
T |
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