View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_low_19 (Length: 287)
Name: NF13698_low_19
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 39855329 - 39855579
Alignment:
| Q |
18 |
ttcataaggggtaatattgtcatttaaataaaatatatattttataaatcatagttaaaattgaatttgttacctagttaaacataaaaaagagtaaata |
117 |
Q |
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| T |
39855329 |
ttcataaggggtaatattgtcatttaaataaaatatatattttataaatcatagttaaaattgaaattgttacctagttaaacataaaaaagagtaaata |
39855428 |
T |
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| Q |
118 |
acgatgtctctttacatcaaatacatgaaagaataagtgtttatcaacagcgcaaacaaaaataatgataagtatttatcatatcactatcttatcttat |
217 |
Q |
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| T |
39855429 |
acgatgtctctttacatcaaatacatgaaagaataagtgtttatcaacagctcaaacaaaaataatgataagtatttatcatatcattatcttatcttat |
39855528 |
T |
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| Q |
218 |
tcttttccaacttcttatcataatgtgaccatattattttattcttatcat |
268 |
Q |
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| T |
39855529 |
tcttttccaacttcttatcataatgtgaccatattattttattcttatcat |
39855579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 40778539 - 40778586
Alignment:
| Q |
192 |
tttatcatatcactatcttatcttattcttttccaacttcttatcata |
239 |
Q |
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| T |
40778539 |
tttatcttatcactatcatatcatattcttatccaacttcttatcata |
40778586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 42008803 - 42008839
Alignment:
| Q |
192 |
tttatcatatcactatcttatcttattcttttccaac |
228 |
Q |
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| T |
42008803 |
tttatcatatcactatcttatcgtattcttatccaac |
42008839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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