View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_low_24 (Length: 249)
Name: NF13698_low_24
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_low_24 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 2182817 - 2183055
Alignment:
| Q |
12 |
aatatgcagttttgtttgaacttgtttatcaggatattttggattatgttcaaggtggtgaaattttatatattcccggaacaatgactccaaccgaagt |
111 |
Q |
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| T |
2182817 |
aatatgcagctttgttt-aacttctttatcaggatattttgaattatgttcaaggtggtgacattttatacattcccggaacaatgactccaaccgaagt |
2182915 |
T |
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| Q |
112 |
aagtgtcaactttccggttcaaactgttaaaagatatcatgatttattcctgcaatattaatgctcaatccattgcatttgactgtgtagaagaattggg |
211 |
Q |
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||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||| || |
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| T |
2182916 |
aagtgtcaacttttaggttcaagctgttaacagatttcatgatttattcctgcaatataaatgttcaatccattgcatttgactgtctaaaagaattagg |
2183015 |
T |
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| Q |
212 |
agaaatc--atttgattatctctgatattattttctttcc |
249 |
Q |
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| T |
2183016 |
agaaatcatatttgattatctctgatttcattttatttcc |
2183055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 3574330 - 3574441
Alignment:
| Q |
12 |
aatatgcagttttgtttgaacttgtttatcaggatattttggattatgttcaaggtggtgaaattttatatattcccggaacaatgactccaaccgaagt |
111 |
Q |
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|||||||||| |||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||| |||| |
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| T |
3574330 |
aatatgcagtcttgttttaacttgtt-atcaatatattttggactatgttcaaggtggtgaaattttatatatcccccggacaatgactccaactgaaga |
3574428 |
T |
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| Q |
112 |
aagtgtcaacttt |
124 |
Q |
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|||| |||||||| |
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| T |
3574429 |
aagtttcaacttt |
3574441 |
T |
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