View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_low_27 (Length: 240)
Name: NF13698_low_27
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 4775248 - 4775040
Alignment:
| Q |
20 |
agaactctactcctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaa |
119 |
Q |
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| T |
4775248 |
agaactctactcctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgctttacgtttgagtttgaatcatgttcctgctagagacaa |
4775149 |
T |
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| Q |
120 |
tttatataaaaggagggtcttggtgctgtttgtttttctgtttttgtagtgaacttgaccagttgcatgtttctgtaatcttgatgggttggtttcgtac |
219 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4775148 |
tttatttaaaaggagggtcttagtgctgtttgtttttctgtttttgtagtgaacttgaccagttgcatgtttctctaatcttgatgggttggtttcgtac |
4775049 |
T |
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| Q |
220 |
acctatgct |
228 |
Q |
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||||||||| |
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| T |
4775048 |
acctatgct |
4775040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 29553092 - 29552984
Alignment:
| Q |
32 |
ctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaag |
131 |
Q |
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|||| ||||||||||||||| | || | |||||||||||| ||||||||||| |||||| || |||||| | ||||| || | ||||||||| |||||| |
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| T |
29553092 |
ctcaggttctttggcttaaaatggttcctctcaaagtctctatttttgcttggcgattgggtctgaatcgtattcctactaaaaacaatttatttaaaag |
29552993 |
T |
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| Q |
132 |
gagggtctt |
140 |
Q |
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||||||||| |
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| T |
29552992 |
gagggtctt |
29552984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 17173614 - 17173714
Alignment:
| Q |
37 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
136 |
Q |
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||||||||||||||||| || | ||||||||| ||||| |||||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
17173614 |
gttctttggcttaaagtggttcatctcaaagtatcaatatttgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
17173713 |
T |
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| Q |
137 |
t |
137 |
Q |
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| T |
17173714 |
t |
17173714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 38397707 - 38397807
Alignment:
| Q |
37 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
136 |
Q |
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||||||||||||||||| || ||||||||| |||||||| ||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
38397707 |
gttctttggcttaaagtggtttctctcaaagtatcaattttcgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
38397806 |
T |
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| Q |
137 |
t |
137 |
Q |
| |
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| |
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| T |
38397807 |
t |
38397807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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