View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_low_3 (Length: 548)
Name: NF13698_low_3
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 4 - 529
Target Start/End: Complemental strand, 10244449 - 10243900
Alignment:
| Q |
4 |
atatagaaccttgaaaattgtaattgtaaatttgaaaagataactaaattatatgagtgtgtataatttgtccaaactccaactcttataattttaagca |
103 |
Q |
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| T |
10244449 |
atatagaaccttgaaaattgtaattgtaaatttgaaaagataactaaattatatgagtgt--ataatttgtccaaactccaactcttaaaattttaagca |
10244352 |
T |
|
| Q |
104 |
ccaaaatcatttttcactaaagc-----------caagttataatgcaatgaaattccaagttcgtgaagtttagtaaattctagattcaaacataaatt |
192 |
Q |
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| T |
10244351 |
ccaaaatcatttttcactaaagctactactgagtcaagctataatgcaatgaaattccaagtacgtgaagtttagtaaattctagattcaaacataaatt |
10244252 |
T |
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| Q |
193 |
aatttttc------------acagaaaattgaactttcatgcaccttactgatatgacagagtattaagtagagtatatata--ctgtgtccaattaagt |
278 |
Q |
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| T |
10244251 |
aattattcgttatgtctactacagaaaattgaactttcatgcaccttactgatatgacagagtattaagtagagtatatatatactatgtccaatttagt |
10244152 |
T |
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| Q |
279 |
caaccaacacaaattaaaaagtgctaaatcacaacattcttattcataacttggagtacaaatgcaccattttctttcacattcttatcttggtaatagg |
378 |
Q |
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| T |
10244151 |
caaccaacacaaattaaaaagtgctaaatcacaacgttcttattcataacttggagtacaaatgcaccattttctttcacattcttatcttggtaatagg |
10244052 |
T |
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| Q |
379 |
atttgtaaacaaaagactaaaatgaagattccaagaatatataatccttgctttggaaactttat-tatctcttatttaacttatttacttaaaaacatc |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |
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| T |
10244051 |
atttgtaaacaaaagactaaaatgaagattccaagaatatataatccttgctttggaaacattatatatctcttatttaacttatttacttaaaagcatc |
10243952 |
T |
|
| Q |
478 |
cgagagtcctatgggtggtgaggaggtccgtaaactggtggcttctcgactg |
529 |
Q |
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| T |
10243951 |
cgagagtcctatgggtggtgaggaggtccgtaaactggtggcttctcgactg |
10243900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 259 - 456
Target Start/End: Complemental strand, 10218136 - 10217936
Alignment:
| Q |
259 |
tatactgtgtccaattaagtcaaccaacacaaattaaaaagtgctaaatcacaacattcttattcataacttggagtacaaat-gcaccattttctttca |
357 |
Q |
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|||||| |||| |||| ||||||| |||||||| ||| |||| |||||||| ||| ||||||||||||| ||| ||||||||| |||||||||||||||| |
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| T |
10218136 |
tatactctgtcaaatttagtcaacaaacacaaaataagaagtactaaatcataacgttcttattcataatttgaagtacaaatggcaccattttctttca |
10218037 |
T |
|
| Q |
358 |
cattcttatcttggtaataggatttgtaaacaaaagactaaaatgaaga-ttccaagaatatataatccttgctttggaaactttat-tatctcttattt |
455 |
Q |
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| T |
10218036 |
cactcttgtcttggcaatagcatttgtaaacataagattgaattgaagatttccaagaatatatgatccttgctttggaaagtttatatatctcttattt |
10217937 |
T |
|
| Q |
456 |
a |
456 |
Q |
| |
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| |
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| T |
10217936 |
a |
10217936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 529
Target Start/End: Complemental strand, 10217888 - 10217845
Alignment:
| Q |
486 |
ctatgggtggtgaggaggtccgtaaactggtggcttctcgactg |
529 |
Q |
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| T |
10217888 |
ctatgggtggtgaggtggtccgtaaactggtggcttctcgactg |
10217845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 10218262 - 10218206
Alignment:
| Q |
139 |
caatgaaattccaagttcgtgaagtttagtaaattctagattcaaacataaattaatt |
196 |
Q |
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|||||||||| ||||||||| || |||||||||||| |||||||||||| |||||||| |
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| T |
10218262 |
caatgaaattacaagttcgttaa-tttagtaaattcgagattcaaacattaattaatt |
10218206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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