View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13698_low_30 (Length: 226)

Name: NF13698_low_30

Description: NF13698

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13698_low_30

[»] chr7 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 173; E-Value: 4e-93

Query Start/End: Original strand, 1 - 221

Target Start/End: Original strand, 41215613 - 41215837

Alignment:

Q	1	ccatgaagcgccataattgataacagcctgcaaacaattttgaaacacgagagttaaatacatatctacgagaaatcgtatnnnnnnnnn----tgtggt	96	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	41215613	ccatgaagcgccataattgataacagcctgcaaaaaattttgaaacacgagagttaaatacatatctacgagaaatcgtaaaaaaaataaaaattgtggt	41215712	T

Q	97	gagaatggttgcttacgggagttttggaggatttgatgtttgtgatgatttgagtgaaattatcatcggaggaagcagatttcaagttagagtgacggtt	196	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41215713	gagaatggttgcttacgggagttttggaggatttgatgtttgtgatgatttgagtgaaattatcatcggaggaagcagatttcaagttagagtgacggtt	41215812	T

Q	197	gatggataaaactaagccggttcct	221	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41215813	gatggataaaactaagccggttcct	41215837	T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 40; E-Value: 0.00000000000008

Query Start/End: Original strand, 97 - 148

Target Start/End: Original strand, 39525753 - 39525803

Alignment:

Q	97	gagaatggttgcttacgggagttttggaggatttgatgtttgtgatgatttg	148	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39525753	gagaatggttgtttacgggagttttggagga-ttgatgtttgtgatgatttg	39525803	T

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