View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_low_31 (Length: 222)
Name: NF13698_low_31
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_low_31 |
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| [»] scaffold0689 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 2183228 - 2183428
Alignment:
| Q |
1 |
tgcagatattgtctgcatatgatgccggtgctaaaatggtcaaggtaagcctttctattttcttttatgtttaaatcaatcgagaactttttcttctgta |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
2183228 |
tgcagatattgtctgcatatgatgcaggtgctaaaatggtcaaggtaggcctttctattttcttttatgtttaaatcaatcga-aaccttttcttctgta |
2183326 |
T |
|
| Q |
101 |
tctatatgaaacaatgtcaatataatattacattccaatttcttcccaatacctcccaaagaaaattccaaattggatctcaaattgacgggtttagggt |
200 |
Q |
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|||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
2183327 |
tctataaaaatcaatatcaatat--tattacattccaatttcttcccaatacctcccaaagaaaatcccaaatcggatctcaaattgacgagtttagggt |
2183424 |
T |
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| Q |
201 |
atat |
204 |
Q |
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|||| |
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| T |
2183425 |
atat |
2183428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 18992849 - 18992781
Alignment:
| Q |
126 |
tattacattccaatttcttcccaatacctcccaaagaaaattccaaattggatctcaaattgacgggtt |
194 |
Q |
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||||||||||||||| |||||||||||||| ||| ||||||| ||||||||| |||||||| |||| |
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| T |
18992849 |
tattacattccaattccttcccaatacctcataaataaaattctctattggatctaaaattgacaggtt |
18992781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 18960888 - 18960820
Alignment:
| Q |
126 |
tattacattccaatttcttcccaatacctcccaaagaaaattccaaattggatctcaaattgacgggtt |
194 |
Q |
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| T |
18960888 |
tattacatttcaattccttcccaatacattctaaataaaatcccatattggatctaaaattgacaggtt |
18960820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 7106 - 7174
Alignment:
| Q |
126 |
tattacattccaatttcttcccaatacctcccaaagaaaattccaaattggatctcaaattgacgggtt |
194 |
Q |
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||||||||||||||| ||| | ||||| ||||| |||||| || ||||||||| |||||||||||||| |
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| T |
7106 |
tattacattccaattccttactgataccccccaaggaaaatcccgaattggatcccaaattgacgggtt |
7174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 190222 - 190149
Alignment:
| Q |
121 |
tataatattacattccaatttcttcccaatacctcccaaagaaaattccaaattggatctcaaattgacgggtt |
194 |
Q |
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|||| |||| ||||||||||||||||| | || |||||| ||||| || ||||||||| ||||||||||||| |
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| T |
190222 |
tatattattccattccaatttcttcccgaaacttcccaagaaaaatcccgaattggatccaaaattgacgggtt |
190149 |
T |
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