View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13698_low_6 (Length: 479)
Name: NF13698_low_6
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 38 - 479
Target Start/End: Original strand, 311019 - 311460
Alignment:
| Q |
38 |
gggatgggatctaaacagaaacagtgaggagaccagcaagagaacccaaaacagcaaaagcaagaagaggactaatatcaagagtatcaaaaacaggtgg |
137 |
Q |
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| T |
311019 |
gggatggaatctaaacagaaacagtgaggagaccagcaagagaacccaaaacagcaaaagcaagaagaggactaatatcaagagtatcaaaaacaggtgg |
311118 |
T |
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| Q |
138 |
aacaatattcctaaacaaacttagataaggatcacaaagatccctaattgcagacaatggttgtctttcccatggaatgttcggaaaccaactcaacaaa |
237 |
Q |
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| T |
311119 |
aacaatattcctaaacaaacttagataaggatcacaaagatccctaattgcagacaatggttgtctttcccatggaatgttcggaaaccaactcaacaaa |
311218 |
T |
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| Q |
238 |
accctaaccaacaacacaccactgtaaatatccaaccatttcttcaaccccgccgctacaaccgtcaacggcgtgttcaccgtccccgacctggtatttt |
337 |
Q |
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| T |
311219 |
accctaaccaacaacacaccactgtaaatatccaaccatttcttcaaccccgccgctacaaccgtcaacggcgtgttcaccgtccccgacctagtatttt |
311318 |
T |
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| Q |
338 |
tcatgacagcgaaacaaagcgacgctgatgatgttgcaattgatgcacataggtctggtggtggaagaatgttgacgaatgctttgacacataaaagcgc |
437 |
Q |
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| T |
311319 |
tcatgacagcgaaacaaagcgacgctgatgatgttgcaattgatgcacataggtctggtggtggaagaatgttgacgaatgctttgacacataaaagcgc |
311418 |
T |
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| Q |
438 |
ggtggcgaatagggttgtaactgttcgagtggaaccagagag |
479 |
Q |
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| T |
311419 |
ggtggcgaatagggttgtaactgttcgagtggaaccagagag |
311460 |
T |
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