View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13698_low_9 (Length: 414)
Name: NF13698_low_9
Description: NF13698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13698_low_9 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0024 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 398 - 2
Alignment:
| Q |
18 |
actaattactaatacttgacaacaccgtttggtttgtagtcattat---gtcaaagtagcttaatccaaactccaaaacttgtttctgtttccacctttt |
114 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
398 |
actaattactacttcttgacaacaccgtttggtttgtagtcattattatgtcaaagtagcttaatccaaactccaaaacttgtttctgtttccacctttt |
299 |
T |
|
| Q |
115 |
ggtcactcaagatgaggtctgaaaatatgggatcattgttttcactgcaaaatcacaaccttttctgtgttaaatttgcagcatcatttttcttagttgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298 |
ggtcactcaagatgaggtctgaaaatatgggatcattgttttcactgcaaaatcacaaccttttctgtgttaaatttgcagcatcatttttcttagttgg |
199 |
T |
|
| Q |
215 |
tcttgcttttcgtcttctcttttgggattctttcagtttatcatcatttgtagtgatacagataccttctcctcctcctcctcaaacagagacaaaatca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
198 |
tcttgcttttcgtcttctcttttgggattctttcagtttatcatcatttgtagtgatacagataccttctcctcct---cctcaaatagagacaaaatca |
102 |
T |
|
| Q |
315 |
gagtcccatgttgtctctttccctcttaatgctccagaatttgatgattttcaagtaaacaatcagaatcaaacctctcttaatggtaagggacattttt |
414 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101 |
gagtcccatgttgtctcttcccctcttaaggctccagaatttgatgattttcaagtaaacaatcagaatcaaacctctcttaatggtaagggacattttt |
2 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University